Ss1.1-rmga35_e18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGATGGTGTCCTGGATGATCTCCAGAGCCGTGGTATTGGTATTTGGAATGCTTTATCC TGCATATTATTCATACAAAGCTGTGAAAACAAAAAACGTGAAGGAATATGTTCGGTGGAT GATGTACTGGATTGTTTTTGCTCTCTATACTGTGATTGAAACAGTAGCAGATCAAACAGT TGCCTGGTTCCCCCTGTACTATGAGCTTAAGATTGCTTTTGTCATATGGCTGCTCTCTCC CTATACCAAAGGAGCAAGTTTAATATATAGAAAATTCCTTCACCCACTACTTTCTGCAAA AGAAAGGGAGATTGATGATTATATTGTACAAGCAAAGGAACGAGGCTATGAGACTATGGT AAACTTTGGGCGACAAGGTTTAAATTTAGCAGCTACTGCTGCTGTCACTGCAGCAGTGAA GAGCCAAGGAGCAATAACTGAACGTTTACGAAGTTTCAGTATGCATGATCTGACAGCTAT CCAAGGTGATGAGCCTGTGGGTCAAAGACCATACCAACCTCTCCCAGAAACAAAAAAGAA AAGTAAGCCAGCCTCCAGTGAATCAGCAGGTTATGGAATTCCACTGAGAGATGGAGATGA GAAAACAGATGAAGAAGCGGATAGGCCATATTCAGATGATGAGATGTTAACACACAAAGG GCTACGAAGATCACAAAGCATGAAATCTGTGAAAGCCGTGAAAGGCCGAAAAGAGGTGCG GTATGGGTCACTAAAATACAAAGTGAAGAAAAGACCACAAGTGTATTTTTAGTCATGTAG ACTTCAAGTATCCCAAGACAAATTATGCTAATATATCAACTTTTTTTCCTAACATCCTAT ATTCAGGATTTATACATTAAAATAATTCTTTAAATTGTAGTGGTGATAGGGTTTACTTTT ATTGTTTTAAATAGTTTTTATGTCTAACAATTACTTCCAAATCTTGACTACTAAAATAAG TTATGCGAAGTGGATAGGAATATCAGAAAAAACAGAAAATTATGCTATTTTCAGATTCCT CAAAAATACTGAGTGCCTAGGATATAAGATGAAACACAAACCCACAGTATACTTGAAAAG AGTCTTTTTATGGTTCAAGATACACCAGCCTTTGTGATACTGTATTGTGCTTACCTCCAT TTGTGTTTTACCTATCACACGAGGTTAGTAATTGAAGAGGCCTCTGATCCAGCAGCGATA TATGCAGGACAAGGGTCTATGTAAGATAAAATATGTTTTGTATATTCTTTACATTTTTAC TTTGTTACTACCTTCTAGTTTTTCCACCATAAACTGAAAGCTTTTGAAACAAATATTTGA AAACCAAGTATTTACATAGCACTTTTATTCCTGACTAGTTTTGCACACTTGAAAATTGTT TACTTATTTTACAATTGTACATTTATATTAGTTTTTTTTTAACTCTGTTATTTGTCACAT TCAGATGCATCAAATTTATGCCTTGAATTACATCATCTCTTTTTCCTGTGGGTTTCATTA GTTATATTCATTTAGTTTTAATAATAAAAAAATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGATGGTGTCCTGGATGATCTCCAGAGCCGTGGTATTGGTATTTGGAATGCTTTATCC TGCATATTATTCATACAAAGCTGTGAAAACAAAAAACGTGAAGGAATATGTTCGGTGGAT GATGTACTGGATTGTTTTTGCTCTCTATACTGTGATTGAAACAGTAGCAGATCAAACAGT TGCCTGGTTCCCCCTGTACTATGAGCTTAAGATTGCTTTTGTCATATGGCTGCTCTCTCC CTATACCAAAGGAGCAAGTTTAATATATAGAAAATTCCTTCACCCACTACTTTCTGCAAA AGAAAGGGAGATTGATGATTATATTGTACAAGCAAAGGAACGAGGCTATGAGACTATGGT AAACTTTGGGCGACAAGGTTTAAATTTAGCAGCTACTGCTGCTGTCACTGCAGCAGTGAA GAGCCAAGGAGCAATAACTGAACGTTTACGAAGTTTCAGTATGCATGATCTGACAGCTAT CCAAGGTGATGAGCCTGTGGGTCAAAGACCATACCAACCTCTCCCAGAAACAAAAAAGAA AAGTAAGCCAGCCTCCAGTGAATCAGCAGGTTATGGAATTCCACTGAGAGATGGAGATGA GAAAACAGATGAAGAAGCGGATAGGCCATATTCAGATGATGAGATGTTAACACACAAAGG GCTACGAAGATCACAAAGCATGAAATCTGTGAAAGCCGTGAAAGGCCGAAAAGAGGTGCG GTATGGGTCACTAAAATACAAAGTGAAGAAAAGACCACAAGTGTATTTTTAGTCATGTAG ACTTCAAGTATCCCAAGACAAATTATGCTAATATATCAACTTTTTTTCCTAACATCCTAT ATTCAGGATTTATACATTAAAATAATTCTTTAAATTGTAGTGGTGATAGGGTTTACTTTT ATTGTTTTAAATAGTTTTTATGTCTAACAATTACTTCCAAATCTTGACTACTAAAATAAG TTATGCGAAGTGGATAGGAATATCAGAAAAAACAGAAAATTATGCTATTTTCAGATTCCT CAAAAATACTGAGTGCCTAGGATATAAGATGAAACACAAACCCACAGTATACTTGAAAAG AGTCTTTTTATGGTTCAAGATACACCAGCCTTTGTGATACTGTATTGTGCTTACCTCCAT TTGTGTTTTACCTATCACACGAGGTTAGTAATTGAAGAGGCCTCTGATCCAGCAGCGATA TATGCAGGACAAGGGTCTATGTAAGATAAAATATGTTTTGTATATTCTTTACATTTTTAC TTTGTTACTACCTTCTAGTTTTTCCACCATAAACTGAAAGCTTTTGAAACAAATATTTGA AAACCAAGTATTTACATAGCACTTTTATTCCTGACTAGTTTTGCACACTTGAAAATTGTT TACTTATTTTACAATTGTACATTTATATTAGTTTTTTTTTAACTCTGTTATTTGTCACAT TCAGATGCATCAAATTTATGCCTTGAATTACATCATCTCTTTTTCCTGTGGGTTTCATTA GTTATATTCATTTAGTTTTAATAATAAAAAAATAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 180-331, gnl|bosTau2|chr29 (19800335-19800488) | |
| 180-331, gnl|Hg17|chr10 (65027783-65027936) | |
| 180-331, gnl|Mm7|chr10 (66623051-66622896) | |
| 420-571, gnl|bosTau2|chr29 (19809081-19809232) | |
| 420-571, gnl|canFam2|chr4 (18619370-18619623) | |
| 420-571, gnl|dasNov1|scaffold_66927 (3072-2797) | |
| 420-571, gnl|echTel1|scaffold_320498 (94161-93896) | |
| 420-571, gnl|galGal2|chr6 (7153072-7152829) | |
| 420-571, gnl|hg17|chr10 (65039896-65040155) | |
| 420-571, gnl|Hg17|chr10 (65039951-65040102) | |
| 420-571, gnl|loxAfr1|scaffold_10505 (52453-52707) | |
| 420-571, gnl|mm7|chr10 (66609003-66608763) | |
| 420-571, gnl|Mm7|chr10 (66608934-66608786) | |
| 420-571, gnl|monDom2|scaffold_67 (3768458-3768658) | |
| 420-571, gnl|oryCun1|scaffold_198288 (50173-49932) | |
| 420-571, gnl|panTro1|chr8 (66017094-66017359) | |
| 420-571, gnl|rheMac2|chr9 (73648073-73647802) | |
| 420-571, gnl|rn3|chr20 (22400137-22400379) | |
| 714-1405, gnl|bosTau2|chr29 (19817259-19817933) | |
| 714-1405, gnl|Hg17|chr10 (65050577-65051255) | |
| 714-1405, gnl|Mm7|chr10 (66600827-66600188) | |
| 1425-1536, gnl|bosTau2|chr29 (19817985-19818094) | |
| 1425-1536, gnl|canFam2|chr4 (18629579-18629850) | |
| 1425-1536, gnl|echTel1|scaffold_320498 (86212-85947) | |
| 1425-1536, gnl|hg17|chr10 (65051151-65051409) | |
| 1425-1536, gnl|Hg17|chr10 (65051282-65051386) | |
| 1425-1536, gnl|loxAfr1|scaffold_10505 (60503-60773) | |
| 1425-1536, gnl|mm7|chr10 (66600298-66600036) | |
| 1425-1536, gnl|monDom2|scaffold_67 (3775215-3775453) | |
| 1425-1536, gnl|oryCun1|scaffold_211709 (5252-4989) | |
| 1425-1536, gnl|panTro1|chr8 (66028734-66028992) | |
| 1425-1536, gnl|rheMac2|chr9 (73636512-73636253) | |
| 1425-1536, gnl|rn3|chr20 (22409682-22409950) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-331, gnl|bosTau2|chr29 (19800335-19800488) | |
| 180-331, gnl|Hg17|chr10 (65027783-65027936) | |
| 180-331, gnl|Mm7|chr10 (66623051-66622896) | |
| 420-571, gnl|bosTau2|chr29 (19809081-19809232) | |
| 420-571, gnl|canFam2|chr4 (18619370-18619623) | |
| 420-571, gnl|dasNov1|scaffold_66927 (3072-2797) | |
| 420-571, gnl|echTel1|scaffold_320498 (94161-93896) | |
| 420-571, gnl|galGal2|chr6 (7153072-7152829) | |
| 420-571, gnl|hg17|chr10 (65039896-65040155) | |
| 420-571, gnl|Hg17|chr10 (65039951-65040102) | |
| 420-571, gnl|loxAfr1|scaffold_10505 (52453-52707) | |
| 420-571, gnl|mm7|chr10 (66609003-66608763) | |
| 420-571, gnl|Mm7|chr10 (66608934-66608786) | |
| 420-571, gnl|monDom2|scaffold_67 (3768458-3768658) | |
| 420-571, gnl|oryCun1|scaffold_198288 (50173-49932) | |
| 420-571, gnl|panTro1|chr8 (66017094-66017359) | |
| 420-571, gnl|rheMac2|chr9 (73648073-73647802) | |
| 420-571, gnl|rn3|chr20 (22400137-22400379) | |
| 714-1405, gnl|bosTau2|chr29 (19817259-19817933) | |
| 714-1405, gnl|Hg17|chr10 (65050577-65051255) | |
| 714-1405, gnl|Mm7|chr10 (66600827-66600188) | |
| 1425-1536, gnl|bosTau2|chr29 (19817985-19818094) | |
| 1425-1536, gnl|canFam2|chr4 (18629579-18629850) | |
| 1425-1536, gnl|echTel1|scaffold_320498 (86212-85947) | |
| 1425-1536, gnl|hg17|chr10 (65051151-65051409) | |
| 1425-1536, gnl|Hg17|chr10 (65051282-65051386) | |
| 1425-1536, gnl|loxAfr1|scaffold_10505 (60503-60773) | |
| 1425-1536, gnl|mm7|chr10 (66600298-66600036) | |
| 1425-1536, gnl|monDom2|scaffold_67 (3775215-3775453) | |
| 1425-1536, gnl|oryCun1|scaffold_211709 (5252-4989) | |
| 1425-1536, gnl|panTro1|chr8 (66028734-66028992) | |
| 1425-1536, gnl|rheMac2|chr9 (73636512-73636253) | |
| 1425-1536, gnl|rn3|chr20 (22409682-22409950) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| ski (0.29347) | |
| cte (0.29274) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ret (0.257467) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| ski (0.29347) | |
| cte (0.29274) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ret (0.257467) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mga (0.160205) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| cly (0.120642) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |