Non-Coding RNA Search

Ss1.1-rmga35_i10.5

Sequence:


               
               TGCATGTATAAGGACTTTTCTTGATAACTTCTCTCTCTCCCCTCTCTTAGCTGCATTTCC
CAGTACCAAGAGGCCTTTCTACTTTTCCTCTCTAGGTGGTGAGAATGCCATATCTTCTTT
CTTGCCTACTTTATGGATTTTGTAGGACTCCGATCAAGTTGGCCAGACTTGACTCTCGAT
ATATGAAAGATATTAAATACCCTTTTAAGGTACTGTCCCCTCAAAAAACAAACAAGCAAC
AGAAGGTAGCTTTCAGGTCTTTTCTGTTTCTGTGTGCTAGAATTCTTGTTTGAGGTTCAA
AACTGAGTAATACTTCTTTTTCTCCCCCAAATGTTGTTGGTTAATCAGGATAACACAACA
TATGAGAAATGAAATTTACATCCACTTAATATTTCAAAAATATCCTTCTTACTTCTGTTT
GTTATAGGAAGGGATCATTATAAAGTAGAAAAAAGTTGTGTGTAATCCCATCTCCAGGAA
ATAATCACGATTAATGATGTTTTTTAGCTGGGTGCTAACTGGGTGATTTAAGAACCGGTT
ACTTTACTCCCTGATCCTCAATTTCCTCCTCTGCTAAATGGGAATAACTCCTCTTCCTCC
TACAGGGTGGTGTTTTCATTCAAATGTCATTTTTATCATAGGAAAAATGATTATATATAA
TTGGTTCTGATCCTATCTCTGTTGTAATACTGTATTATTCTAATTTATATGTATCTTTAT
TTTTAATTTATATGTATCTTTATAGTACATTTATATGTGTATCTTTATAGTACATTTTTA
AAACTTGGTAAAACAAATATACATCTTTTACTATCTTTTTACATGCCTTTTCAAACAATT
TGTGCCAATCATAACTTGTTTATTCTCTCAAATGAACATTGGAATTATTGTGTTAGCTTC
TTATATATTTTATTGGTGTTTTCATTAAGATTACCTTAATGTTTATGATATTAAATATTC
TAATAAACAGGTTTTCTCTTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATGTATAAGGACTTTTCTTGATAACTTCTCTCTCTCCCCTCTCTTAGCTGCATTTCC
CAGTACCAAGAGGCCTTTCTACTTTTCCTCTCTAGGTGGTGAGAATGCCATATCTTCTTT
CTTGCCTACTTTATGGATTTTGTAGGACTCCGATCAAGTTGGCCAGACTTGACTCTCGAT
ATATGAAAGATATTAAATACCCTTTTAAGGTACTGTCCCCTCAAAAAACAAACAAGCAAC
AGAAGGTAGCTTTCAGGTCTTTTCTGTTTCTGTGTGCTAGAATTCTTGTTTGAGGTTCAA
AACTGAGTAATACTTCTTTTTCTCCCCCAAATGTTGTTGGTTAATCAGGATAACACAACA
TATGAGAAATGAAATTTACATCCACTTAATATTTCAAAAATATCCTTCTTACTTCTGTTT
GTTATAGGAAGGGATCATTATAAAGTAGAAAAAAGTTGTGTGTAATCCCATCTCCAGGAA
ATAATCACGATTAATGATGTTTTTTAGCTGGGTGCTAACTGGGTGATTTAAGAACCGGTT
ACTTTACTCCCTGATCCTCAATTTCCTCCTCTGCTAAATGGGAATAACTCCTCTTCCTCC
TACAGGGTGGTGTTTTCATTCAAATGTCATTTTTATCATAGGAAAAATGATTATATATAA
TTGGTTCTGATCCTATCTCTGTTGTAATACTGTATTATTCTAATTTATATGTATCTTTAT
TTTTAATTTATATGTATCTTTATAGTACATTTATATGTGTATCTTTATAGTACATTTTTA
AAACTTGGTAAAACAAATATACATCTTTTACTATCTTTTTACATGCCTTTTCAAACAATT
TGTGCCAATCATAACTTGTTTATTCTCTCAAATGAACATTGGAATTATTGTGTTAGCTTC
TTATATATTTTATTGGTGTTTTCATTAAGATTACCTTAATGTTTATGATATTAAATATTC
TAATAAACAGGTTTTCTCTTCTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               15-151, - strand, RNAz p=0.942246
               

               
               29-136, - strand, RNAz p=0.964066

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-151, - strand, RNAz p=0.942246
               

               
               29-136, - strand, RNAz p=0.964066

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               15-524, gnl|bosTau2|chr15 (11671959-11671455)
               

               
               15-524, gnl|canFam2|chr5 (21882624-21881923)
               

               
               15-524, gnl|hg17|chr11 (113859867-113860669)
               

               
               15-524, gnl|Hg17|chr11 (113860307-113860855)
               

               
               15-524, gnl|panTro1|chr9 (115864392-115865194)
               

               
               15-524, gnl|rheMac2|chr14 (112971034-112971833)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-524, gnl|bosTau2|chr15 (11671959-11671455)
               

               
               15-524, gnl|canFam2|chr5 (21882624-21881923)
               

               
               15-524, gnl|hg17|chr11 (113859867-113860669)
               

               
               15-524, gnl|Hg17|chr11 (113860307-113860855)
               

               
               15-524, gnl|panTro1|chr9 (115864392-115865194)
               

               
               15-524, gnl|rheMac2|chr14 (112971034-112971833)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.197785)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)

	15-151, - strand, RNAz p=0.942246
	29-136, - strand, RNAz p=0.964066

	15-524, gnl\|bosTau2\|chr15 (11671959-11671455)
	15-524, gnl\|canFam2\|chr5 (21882624-21881923)
	15-524, gnl\|hg17\|chr11 (113859867-113860669)
	15-524, gnl\|Hg17\|chr11 (113860307-113860855)
	15-524, gnl\|panTro1\|chr9 (115864392-115865194)
	15-524, gnl\|rheMac2\|chr14 (112971034-112971833)

	fcc (0.197785)
	mga (0.160205)
	liv (0.146284)
	nca (0.136874)
	pla (0.133672)
	ova (0.129132)