Non-Coding RNA Search

Ss1.1-rmga36_h13.5

Sequence:


               
               AAAACATCATATGCAATTTTAAAACCTTTTATATTTTTGCAATAAAGTACATTTTGACTT
CTTTGGCATAACGTCAGTAATCTACATATTCCAGTGGTTTTAAGGACAGGCAGTTTAGTC
ATGATAATAGCGAAGAGTCTTTTTAGATGAGAGGTCGTTATTTTCCTCATATACCTGCTT
CCTTTTTTCATTTTGCCATTCTCTGTATTCGTTATCTTTAAAAATTTGAGTTTGCCATTT
AATGTGACCAGTATTTTAAAATGCTCTTTAAATTTACTTATCTTCTAAAAGCCTAAGATC
TTATTACATATGATGAGAAAAATGTCTCCTATAGCAAAAATATTTGGGGTCCTTATCAAC
ATGCCTACATGATATTTCTGGGTTCTCCGCTAAGCGTACATAATACATTCCTTTGCAGAC
TCCCATGCAAACTCCCATGGGTTTCCAAGGTGGGAGAAATAAATGTTTGTAAGCAAAACA
AAGATAAATGGAATAAAGATAAATGGAATTTCTCCCCATTCCGAATACACTATTAGGCCT
TGCCATTTGCGCTAATGTAGACTCTCAGAAATGCAGAGTGAACCCAAATGCATAGGTTTT
TGTTGACAATTGATATGTTTAATTATTCTGCTACATCAAATGAATGTAATGACATTCAGC
CAAATCAGTATACTCTTATGTGATTTCTAGGCCTACATGACCCCAGTGTCGAATGAGATT
ATTTCTAATCCGTTGTTCACTTTTAAATGAGCAATTTCACTTTGGGAATCTTTTCAAAGA
AATATCTACATGAGTAAAAATATTCTGTGGCTAGTGTGGTCTTATGAGAGAATGTTTATG
GTCTTGCTTGTGTAATGAAGACGTGGTTAAAATATGTTAAAATGGATAATGTCTATATAA
GAAGCATATAAAGTATACCTTCGGGCCACATTTTAGAACACTTCAACAATTTTCCAAACT
TTCCCATTACCTGGAAGTAGGAAGAGAGCCTACTAGGTGAAGAGGACTTGTTTTCTATTT
CAGGTTTTAAAAGCCATGTCTGCTAAACAAGAAAAAAACTCAAAGAACCCCATGTTCCTA
GTTCATTATTCTGTATTCTTAACTTTATTCACTTTTTCAAGTTACCTATTTTGTTGCATA
AGCTGATTGTTAATTACAAATGCCTGTTTAATAAAGAACTCTGACCAAGACTGTAAATGC
CAGTTACATTATTTTCAGTATTGTTGGTTATATTTAAATTTTCCTTATAATAAAGCACAC
TTTTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACATCATATGCAATTTTAAAACCTTTTATATTTTTGCAATAAAGTACATTTTGACTT
CTTTGGCATAACGTCAGTAATCTACATATTCCAGTGGTTTTAAGGACAGGCAGTTTAGTC
ATGATAATAGCGAAGAGTCTTTTTAGATGAGAGGTCGTTATTTTCCTCATATACCTGCTT
CCTTTTTTCATTTTGCCATTCTCTGTATTCGTTATCTTTAAAAATTTGAGTTTGCCATTT
AATGTGACCAGTATTTTAAAATGCTCTTTAAATTTACTTATCTTCTAAAAGCCTAAGATC
TTATTACATATGATGAGAAAAATGTCTCCTATAGCAAAAATATTTGGGGTCCTTATCAAC
ATGCCTACATGATATTTCTGGGTTCTCCGCTAAGCGTACATAATACATTCCTTTGCAGAC
TCCCATGCAAACTCCCATGGGTTTCCAAGGTGGGAGAAATAAATGTTTGTAAGCAAAACA
AAGATAAATGGAATAAAGATAAATGGAATTTCTCCCCATTCCGAATACACTATTAGGCCT
TGCCATTTGCGCTAATGTAGACTCTCAGAAATGCAGAGTGAACCCAAATGCATAGGTTTT
TGTTGACAATTGATATGTTTAATTATTCTGCTACATCAAATGAATGTAATGACATTCAGC
CAAATCAGTATACTCTTATGTGATTTCTAGGCCTACATGACCCCAGTGTCGAATGAGATT
ATTTCTAATCCGTTGTTCACTTTTAAATGAGCAATTTCACTTTGGGAATCTTTTCAAAGA
AATATCTACATGAGTAAAAATATTCTGTGGCTAGTGTGGTCTTATGAGAGAATGTTTATG
GTCTTGCTTGTGTAATGAAGACGTGGTTAAAATATGTTAAAATGGATAATGTCTATATAA
GAAGCATATAAAGTATACCTTCGGGCCACATTTTAGAACACTTCAACAATTTTCCAAACT
TTCCCATTACCTGGAAGTAGGAAGAGAGCCTACTAGGTGAAGAGGACTTGTTTTCTATTT
CAGGTTTTAAAAGCCATGTCTGCTAAACAAGAAAAAAACTCAAAGAACCCCATGTTCCTA
GTTCATTATTCTGTATTCTTAACTTTATTCACTTTTTCAAGTTACCTATTTTGTTGCATA
AGCTGATTGTTAATTACAAATGCCTGTTTAATAAAGAACTCTGACCAAGACTGTAAATGC
CAGTTACATTATTTTCAGTATTGTTGGTTATATTTAAATTTTCCTTATAATAAAGCACAC
TTTTATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1273, gnl|bosTau2|chr4 (20473047-20474319)
               

               
               1-1273, gnl|Hg17|chr7 (106394512-106395899)
               

               
               1-1273, gnl|Mm7|chr12 (29799407-29798034)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1273, gnl|bosTau2|chr4 (20473047-20474319)
               

               
               1-1273, gnl|Hg17|chr7 (106394512-106395899)
               

               
               1-1273, gnl|Mm7|chr12 (29799407-29798034)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               cbr (3.58331)
               

               
               fat (0.58971)
               

               
               ova (0.516529)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               sag (0.36543)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (3.58331)
               

               
               fat (0.58971)
               

               
               ova (0.516529)
               

               
               mga (0.480615)
               

               
               fco (0.471624)
               

               
               sag (0.36543)
               

               
               liv (0.292569)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-1273, gnl\|bosTau2\|chr4 (20473047-20474319)
	1-1273, gnl\|Hg17\|chr7 (106394512-106395899)
	1-1273, gnl\|Mm7\|chr12 (29799407-29798034)

	cbr (3.58331)
	fat (0.58971)
	ova (0.516529)
	mga (0.480615)
	fco (0.471624)
	sag (0.36543)
	liv (0.292569)
	ret (0.257467)
	sug (0.254582)
	tra (0.246184)
	fcc (0.197785)
	eye (0.170503)
	tbr (0.154178)
	lun (0.150489)
	lyg (0.133103)
	pgl (0.118483)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)