Ss1.1-rmgm012_a15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATTTCTTGGACTATTGCATACGGAGGTTTTCAACCAGCGACTGGAGCAAGAATATAAT GCTTCTGTTATTTTGACAACCCCTACTGTTCCATATAAAGCAGTTCTTTCATCAGCAAAA TTGATAAAGGAATACAGAGAAAAGGAAATTACAATCATCAACCCTGCACAATTTCCTGAT AAGTCAAAAGTAACAGAATATTTGGAGCCAATTGTTTTGGGCACCATTATCACGCCAGAT GAATATACTGGAAAAATAATAATGCTTTGCCAGGCCAGAAGAGCAGTTCAGAAGAACATG ATGTATATCGATCAAACTAGAGTGATGCTTAAATATCTCTTTCCTTTGAATGAAATTGTG GTAGATTTTTATGATTCTTTGAAATCCCTGTCTTCTGGATATGCCAGTTTTGATTATGAA GATGCAGGCTACCAGACTGCAGAACTTGTAAAAATGGATATTCTGCTGAATGGAAATATT GTAGAAGAGCTAGTAACTGTTGTACACAAAGACAAAGCATACTCTGTTGGCAAAACCATA TGTGAACGTCTGAAGGATTCTCTTCCAAGACAGCTGTTTGAGATAGCAATTCAAGCTGCT ATTGGAAGTAAAATCATTGCAAGAGAAACTGTGAAAGCCTATAGGAAAAATGTTTTGGCC AAATGTTACGGTGGTGATATTACCCGAAAAATGAAACTTTTGAAGAGACAAGCAGAAGGA AAGAAAAAACTGAGGAAAATTGGCAACATTGAAGTTCCAAAAGATGCTTTTATAAAAGTT CTAAAAACACAATCTGATAAATAATTGGTGGGGATATATACATTTCATACATTAAAAATT GTGTATCTTTTAATTTTTCTTAGTAATTTATAATATGTTGAAAACAACAGAATGAAAATT AAAAATTTTTTTTGTTACTTCCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATTTCTTGGACTATTGCATACGGAGGTTTTCAACCAGCGACTGGAGCAAGAATATAAT GCTTCTGTTATTTTGACAACCCCTACTGTTCCATATAAAGCAGTTCTTTCATCAGCAAAA TTGATAAAGGAATACAGAGAAAAGGAAATTACAATCATCAACCCTGCACAATTTCCTGAT AAGTCAAAAGTAACAGAATATTTGGAGCCAATTGTTTTGGGCACCATTATCACGCCAGAT GAATATACTGGAAAAATAATAATGCTTTGCCAGGCCAGAAGAGCAGTTCAGAAGAACATG ATGTATATCGATCAAACTAGAGTGATGCTTAAATATCTCTTTCCTTTGAATGAAATTGTG GTAGATTTTTATGATTCTTTGAAATCCCTGTCTTCTGGATATGCCAGTTTTGATTATGAA GATGCAGGCTACCAGACTGCAGAACTTGTAAAAATGGATATTCTGCTGAATGGAAATATT GTAGAAGAGCTAGTAACTGTTGTACACAAAGACAAAGCATACTCTGTTGGCAAAACCATA TGTGAACGTCTGAAGGATTCTCTTCCAAGACAGCTGTTTGAGATAGCAATTCAAGCTGCT ATTGGAAGTAAAATCATTGCAAGAGAAACTGTGAAAGCCTATAGGAAAAATGTTTTGGCC AAATGTTACGGTGGTGATATTACCCGAAAAATGAAACTTTTGAAGAGACAAGCAGAAGGA AAGAAAAAACTGAGGAAAATTGGCAACATTGAAGTTCCAAAAGATGCTTTTATAAAAGTT CTAAAAACACAATCTGATAAATAATTGGTGGGGATATATACATTTCATACATTAAAAATT GTGTATCTTTTAATTTTTCTTAGTAATTTATAATATGTTGAAAACAACAGAATGAAAATT AAAAATTTTTTTTGTTACTTCCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 507-634, - strand, RNAz p=0.666336 | |
| 540-634, - strand, RNAz p=0.551504 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 507-634, - strand, RNAz p=0.666336 | |
| 540-634, - strand, RNAz p=0.551504 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 128-274, gnl|bosTau2|chr6 (33410667-33410813) | |
| 128-274, gnl|canFam2|chr13 (44131883-44131998) | |
| 128-274, gnl|danRer3|chrNA (105317277-105317167) | |
| 128-274, gnl|echTel1|scaffold_325368 (35470-35359) | |
| 128-274, gnl|galGal2|chr4 (68082286-68082173) | |
| 128-274, gnl|hg17|chr4 (44533644-44533759) | |
| 128-274, gnl|Hg17|chr4 (44533660-44533806) | |
| 128-274, gnl|loxAfr1|scaffold_947 (71461-71347) | |
| 128-274, gnl|mm7|chr5 (68922946-68923061) | |
| 128-274, gnl|Mm7|chr5 (68922962-68923108) | |
| 128-274, gnl|monDom2|scaffold_26 (10424464-10424583) | |
| 128-274, gnl|oryCun1|scaffold_200943 (40155-40043) | |
| 128-274, gnl|rheMac2|chr5 (39831628-39831743) | |
| 128-274, gnl|rn3|chr14 (41078410-41078295) | |
| 128-274, gnl|tetNig1|chr1 (9424199-9424297) | |
| 128-274, gnl|xenTro1|scaffold_84 (508841-508947) | |
| 507-634, gnl|bosTau2|chr6 (33415527-33415653) | |
| 507-634, gnl|canFam2|chr13 (44137117-44137285) | |
| 507-634, gnl|danRer3|chrNA (105313918-105313740) | |
| 507-634, gnl|dasNov1|scaffold_12509 (11007-10850) | |
| 507-634, gnl|echTel1|scaffold_41355 (1196-1028) | |
| 507-634, gnl|fr1|chrUn (168327203-168327343) | |
| 507-634, gnl|galGal2|chr4 (68079479-68079313) | |
| 507-634, gnl|hg17|chr4 (44538532-44538699) | |
| 507-634, gnl|Hg17|chr4 (44538557-44538683) | |
| 507-634, gnl|loxAfr1|scaffold_947 (67408-67240) | |
| 507-634, gnl|mm7|chr5 (68925811-68925971) | |
| 507-634, gnl|Mm7|chr5 (68925829-68925955) | |
| 507-634, gnl|monDom2|scaffold_26 (10439908-10440084) | |
| 507-634, gnl|panTro1|chr3 (47243665-47243832) | |
| 507-634, gnl|rheMac2|chr5 (39836614-39836781) | |
| 507-634, gnl|rn3|chr14 (41075637-41075477) | |
| 507-634, gnl|tetNig1|chr1 (9425440-9425580) | |
| 507-634, gnl|xenTro1|scaffold_84 (510731-510888) | |
| 650-820, gnl|bosTau2|chr22 (5358400-5358230) | |
| 650-820, gnl|Hg17|chr4 (44541489-44541641) | |
| 650-820, gnl|Mm7|chr5 (68928178-68928332) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-274, gnl|bosTau2|chr6 (33410667-33410813) | |
| 128-274, gnl|canFam2|chr13 (44131883-44131998) | |
| 128-274, gnl|danRer3|chrNA (105317277-105317167) | |
| 128-274, gnl|echTel1|scaffold_325368 (35470-35359) | |
| 128-274, gnl|galGal2|chr4 (68082286-68082173) | |
| 128-274, gnl|hg17|chr4 (44533644-44533759) | |
| 128-274, gnl|Hg17|chr4 (44533660-44533806) | |
| 128-274, gnl|loxAfr1|scaffold_947 (71461-71347) | |
| 128-274, gnl|mm7|chr5 (68922946-68923061) | |
| 128-274, gnl|Mm7|chr5 (68922962-68923108) | |
| 128-274, gnl|monDom2|scaffold_26 (10424464-10424583) | |
| 128-274, gnl|oryCun1|scaffold_200943 (40155-40043) | |
| 128-274, gnl|rheMac2|chr5 (39831628-39831743) | |
| 128-274, gnl|rn3|chr14 (41078410-41078295) | |
| 128-274, gnl|tetNig1|chr1 (9424199-9424297) | |
| 128-274, gnl|xenTro1|scaffold_84 (508841-508947) | |
| 507-634, gnl|bosTau2|chr6 (33415527-33415653) | |
| 507-634, gnl|canFam2|chr13 (44137117-44137285) | |
| 507-634, gnl|danRer3|chrNA (105313918-105313740) | |
| 507-634, gnl|dasNov1|scaffold_12509 (11007-10850) | |
| 507-634, gnl|echTel1|scaffold_41355 (1196-1028) | |
| 507-634, gnl|fr1|chrUn (168327203-168327343) | |
| 507-634, gnl|galGal2|chr4 (68079479-68079313) | |
| 507-634, gnl|hg17|chr4 (44538532-44538699) | |
| 507-634, gnl|Hg17|chr4 (44538557-44538683) | |
| 507-634, gnl|loxAfr1|scaffold_947 (67408-67240) | |
| 507-634, gnl|mm7|chr5 (68925811-68925971) | |
| 507-634, gnl|Mm7|chr5 (68925829-68925955) | |
| 507-634, gnl|monDom2|scaffold_26 (10439908-10440084) | |
| 507-634, gnl|panTro1|chr3 (47243665-47243832) | |
| 507-634, gnl|rheMac2|chr5 (39836614-39836781) | |
| 507-634, gnl|rn3|chr14 (41075637-41075477) | |
| 507-634, gnl|tetNig1|chr1 (9425440-9425580) | |
| 507-634, gnl|xenTro1|scaffold_84 (510731-510888) | |
| 650-820, gnl|bosTau2|chr22 (5358400-5358230) | |
| 650-820, gnl|Hg17|chr4 (44541489-44541641) | |
| 650-820, gnl|Mm7|chr5 (68928178-68928332) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lin (0.145603) | |
| kid (0.129735) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| nco (0.161734) | |
| mga (0.160205) | |
| lin (0.145603) | |
| kid (0.129735) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |