Non-Coding RNA Search

Ss1.1-rmgm012_a17.5

Sequence:


               
               TGTTTGGAGCTGAAATTAATCTGAAAGGAATCCCTGTGTATAGATTTATTCTTCCATCCA
CAGCTTTTGCATCTCCACGTGAAAATCCAGACAATCATTGTTTCTGCACAGAAAAAGTTG
TCTCCAAAAATTGTACAGTATTTGGTGTGCTAGACATTAGCAAATGCAAAGAAGGAAAAC
CTGTGTACATTTCACTTCCTCATTTTCTACATGGAAGTCCTGAACTTTCAGAACTTATTG
AAGGCTTAAGTCCAAATGAAGAAGAGCATAGCACTTACTTGGATGTTGAACCTATAACTG
GATTCACGTTACGATTTGCAAAACGGTTGCAGGTCAACCTATTGGTCAAACCAGCAAAAA
AAATTGAAGCATTAAAAAATCTGAAGCAGAACTATATCGTGCCTATCCTCTGGCTTAATG
AGACTGGTACAATTGGTGATGAGAAGGCAGAAATGTTCAGAAACCAAGTGACTGGAAAAA
TTAACCTCCTTGGCCTGGTAGAAATCATCTTACTGAGTGTTGGTGTGGGGATGTTTATTG
TTTTTATGATTTCATACTGTGCATGCAGATCAAAGAGAGTAAATTAAGAAGCAAATGAGT
CTTTGCATTTATGCACCAGCTACGTCAGGACCTTTCTTAATATCTATTTACAAAATGAAT
ATGCAATATGCTTTATTTTTGCAAAACATCTTATAGTTGAAGAACTGGTGGCACATTTTT
TTTTTTTTTCGCACTGAGTAGGAGCACATTTCTTAAGGGGTGTTATGATAACATTGAAAA
AATGACATAAAATCCCTATTTGGAACAGAAACCCAGCACCTTTTAAAATTCAACATTATA
CAATCAAATGGATTTCAGTTTCTACAGACCTCACTTGCGCATGATCCAATTACATTTACT
TGGCATTGCTTTATGAAATGCTTCTCTGGTGTCAAAACCGGCAGAGGGATGAATGTTCTA
AATGCTCATGCCTTGTCTTCTTCAGCAAGGAGAAAAGATCACTACCATCATGAGTGTCCC
TGCAACTCACAGACCCCAGGACTGTCAGTACATTGCACTTCAGGAGCATCAACTATTTTG
AAAAGACATTCAAGAATGGAAACTAAATGATTGGCCTATGAACCGTTTACTATGCATTAT
TTGAGTTTCTTTCTCTATGGAAACCATAGTACAGCATCAGCAGACATTGTAACCATGCTC
TTTATAAAAATATGGGCTTATATTTTTACCAATACTTACACAAATGGCCATGTTTGAGAC
TTTGTCTTTTTCCATGTTCTGTAGTTCTTCTGGAAATCTGAGTAGATTTTGATCTTTCTA
CTCAGTTGGATACAACTTATGCTTGGCAACTTCAGAACGCTGTACTAGTATTAAGAGATG
TAAATGATAATAAAAATTATTGTATGGGTGATTACAAAGAGTAGAATATGCATTGATAGT
TATTTGCTGTAATATTTCTTTCTGTCATAGTCACCTCAGAAAGACCGATTCCAAACATTA
AAAATGTCATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACATTTACT
CTAGTTTCCTGTCTCAAGTAGTTGGTCTGACTTTAATTTTTTTATGAATATATATTTCCT
TTTGAACCATTCTTTTCTAAATTTAATCTCAGCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTGGAGCTGAAATTAATCTGAAAGGAATCCCTGTGTATAGATTTATTCTTCCATCCA
CAGCTTTTGCATCTCCACGTGAAAATCCAGACAATCATTGTTTCTGCACAGAAAAAGTTG
TCTCCAAAAATTGTACAGTATTTGGTGTGCTAGACATTAGCAAATGCAAAGAAGGAAAAC
CTGTGTACATTTCACTTCCTCATTTTCTACATGGAAGTCCTGAACTTTCAGAACTTATTG
AAGGCTTAAGTCCAAATGAAGAAGAGCATAGCACTTACTTGGATGTTGAACCTATAACTG
GATTCACGTTACGATTTGCAAAACGGTTGCAGGTCAACCTATTGGTCAAACCAGCAAAAA
AAATTGAAGCATTAAAAAATCTGAAGCAGAACTATATCGTGCCTATCCTCTGGCTTAATG
AGACTGGTACAATTGGTGATGAGAAGGCAGAAATGTTCAGAAACCAAGTGACTGGAAAAA
TTAACCTCCTTGGCCTGGTAGAAATCATCTTACTGAGTGTTGGTGTGGGGATGTTTATTG
TTTTTATGATTTCATACTGTGCATGCAGATCAAAGAGAGTAAATTAAGAAGCAAATGAGT
CTTTGCATTTATGCACCAGCTACGTCAGGACCTTTCTTAATATCTATTTACAAAATGAAT
ATGCAATATGCTTTATTTTTGCAAAACATCTTATAGTTGAAGAACTGGTGGCACATTTTT
TTTTTTTTTCGCACTGAGTAGGAGCACATTTCTTAAGGGGTGTTATGATAACATTGAAAA
AATGACATAAAATCCCTATTTGGAACAGAAACCCAGCACCTTTTAAAATTCAACATTATA
CAATCAAATGGATTTCAGTTTCTACAGACCTCACTTGCGCATGATCCAATTACATTTACT
TGGCATTGCTTTATGAAATGCTTCTCTGGTGTCAAAACCGGCAGAGGGATGAATGTTCTA
AATGCTCATGCCTTGTCTTCTTCAGCAAGGAGAAAAGATCACTACCATCATGAGTGTCCC
TGCAACTCACAGACCCCAGGACTGTCAGTACATTGCACTTCAGGAGCATCAACTATTTTG
AAAAGACATTCAAGAATGGAAACTAAATGATTGGCCTATGAACCGTTTACTATGCATTAT
TTGAGTTTCTTTCTCTATGGAAACCATAGTACAGCATCAGCAGACATTGTAACCATGCTC
TTTATAAAAATATGGGCTTATATTTTTACCAATACTTACACAAATGGCCATGTTTGAGAC
TTTGTCTTTTTCCATGTTCTGTAGTTCTTCTGGAAATCTGAGTAGATTTTGATCTTTCTA
CTCAGTTGGATACAACTTATGCTTGGCAACTTCAGAACGCTGTACTAGTATTAAGAGATG
TAAATGATAATAAAAATTATTGTATGGGTGATTACAAAGAGTAGAATATGCATTGATAGT
TATTTGCTGTAATATTTCTTTCTGTCATAGTCACCTCAGAAAGACCGATTCCAAACATTA
AAAATGTCATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACATTTACT
CTAGTTTCCTGTCTCAAGTAGTTGGTCTGACTTTAATTTTTTTATGAATATATATTTCCT
TTTGAACCATTCTTTTCTAAATTTAATCTCAGCCAT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-175, gnl|bosTau2|chr4 (14714649-14714823)
               

               
               1-175, gnl|Hg17|chr7 (79944958-79945132)
               

               
               1-175, gnl|Mm7|chr5 (16810688-16810514)
               


               
               1283-1649, gnl|bosTau2|chr4 (14783921-14784292)
               

               
               1283-1649, gnl|Mm7|chr5 (16796123-16795752)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr4 (14714649-14714823)
               

               
               1-175, gnl|Hg17|chr7 (79944958-79945132)
               

               
               1-175, gnl|Mm7|chr5 (16810688-16810514)
               


               
               1283-1649, gnl|bosTau2|chr4 (14783921-14784292)
               

               
               1283-1649, gnl|Mm7|chr5 (16796123-16795752)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               vin (2.66046)
               

               
               fat (2.65369)
               

               
               isp (2.55639)
               

               
               bfe (2.39772)
               

               
               tbr (2.00432)
               

               
               hea (1.84049)
               

               
               mgm (1.62308)
               

               
               ldo (1.45504)
               

               
               mga (1.44185)
               

               
               hlv (0.835538)
               

               
               sme (0.610874)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               clu (0.478583)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               mas (0.42061)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               ste (0.270416)
               

               
               fbs (0.175346)
               

               
               ctl (0.153069)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (2.66046)
               

               
               fat (2.65369)
               

               
               isp (2.55639)
               

               
               bfe (2.39772)
               

               
               tbr (2.00432)
               

               
               hea (1.84049)
               

               
               mgm (1.62308)
               

               
               ldo (1.45504)
               

               
               mga (1.44185)
               

               
               hlv (0.835538)
               

               
               sme (0.610874)
               

               
               sug (0.509165)
               

               
               tra (0.492368)
               

               
               clu (0.478583)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               mas (0.42061)
               

               
               bla (0.373042)
               

               
               gul (0.355177)
               

               
               lnt (0.284616)
               

               
               ste (0.270416)
               

               
               fbs (0.175346)
               

               
               ctl (0.153069)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	1-175, gnl\|bosTau2\|chr4 (14714649-14714823)
	1-175, gnl\|Hg17\|chr7 (79944958-79945132)
	1-175, gnl\|Mm7\|chr5 (16810688-16810514)

	1283-1649, gnl\|bosTau2\|chr4 (14783921-14784292)
	1283-1649, gnl\|Mm7\|chr5 (16796123-16795752)

	vin (2.66046)
	fat (2.65369)
	isp (2.55639)
	bfe (2.39772)
	tbr (2.00432)
	hea (1.84049)
	mgm (1.62308)
	ldo (1.45504)
	mga (1.44185)
	hlv (0.835538)
	sme (0.610874)
	sug (0.509165)
	tra (0.492368)
	clu (0.478583)
	ski (0.440205)
	liv (0.438853)
	mas (0.42061)
	bla (0.373042)
	gul (0.355177)
	lnt (0.284616)
	ste (0.270416)
	fbs (0.175346)
	ctl (0.153069)
	csk (0.140746)
	ssp (0.13552)
	lyg (0.133103)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	spc (0.113366)