Non-Coding RNA Search

Ss1.1-rmgm012_e15.5

Sequence:


               
               AACTTTTTATACTGGAGATTAAAAAAAAAAAAAAGGAAATTTTTGTGGCTTACTCTAGTG
GGCCCCCTGACAATGACTGATTTCAAGTTTGATTTCTGGTTGATCGAAAGAAAGTTGCTT
TTCTTTTGAGAATTAAAAACTTTGGCTTGATTTCTTTTTTCCCTTTGCTTATATCTAGCA
TTAGAATTTTGTCTTAAAATACAGCGGTAAGTTTCACTTTTTATTCTGTATTGTGCAGTT
ACACAATAAGGTAATTAGATTTAGAAGTACTCAAGTCACTTTAAGTGGATAAATGTATTA
GTTAAAACTTTAGGAGTTTGCTTTTTCGCTGTTTAGATCAGAGTTTTTTCTGATTCTTCT
GTCCTCATTGTGAACATAACCGTGTAGTTGAAACAGTCAAACTTATTTTTGTAACGTATG
TTATCGTGTGATGCAGTTTTTTGCTTCTGTCTCCAATATTAAACCATTTTCCTAATAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTTTTATACTGGAGATTAAAAAAAAAAAAAAGGAAATTTTTGTGGCTTACTCTAGTG
GGCCCCCTGACAATGACTGATTTCAAGTTTGATTTCTGGTTGATCGAAAGAAAGTTGCTT
TTCTTTTGAGAATTAAAAACTTTGGCTTGATTTCTTTTTTCCCTTTGCTTATATCTAGCA
TTAGAATTTTGTCTTAAAATACAGCGGTAAGTTTCACTTTTTATTCTGTATTGTGCAGTT
ACACAATAAGGTAATTAGATTTAGAAGTACTCAAGTCACTTTAAGTGGATAAATGTATTA
GTTAAAACTTTAGGAGTTTGCTTTTTCGCTGTTTAGATCAGAGTTTTTTCTGATTCTTCT
GTCCTCATTGTGAACATAACCGTGTAGTTGAAACAGTCAAACTTATTTTTGTAACGTATG
TTATCGTGTGATGCAGTTTTTTGCTTCTGTCTCCAATATTAAACCATTTTCCTAATAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-103, + strand, RNAz p=0.549193

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-103, + strand, RNAz p=0.549193

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_006561, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006561, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-477, gnl|bosTau2|chr13 (5637879-5637408)
               

               
               1-477, gnl|Hg17|chr10 (11415876-11416363)
               

               
               1-477, gnl|Mm7|chr2 (6459613-6459142)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-477, gnl|bosTau2|chr13 (5637879-5637408)
               

               
               1-477, gnl|Hg17|chr10 (11415876-11416363)
               

               
               1-477, gnl|Mm7|chr2 (6459613-6459142)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mgm (0.180343)

	1-477, gnl\|bosTau2\|chr13 (5637879-5637408)
	1-477, gnl\|Hg17\|chr10 (11415876-11416363)
	1-477, gnl\|Mm7\|chr2 (6459613-6459142)

	isp (0.300752)
	fce (0.271592)
	mgp (0.230681)
	nms (0.213858)
	mgm (0.180343)