Non-Coding RNA Search

Ss1.1-rmgm018_k22.5

Sequence:


               
               GATGTATAATTTATTTTATAGGCTGTTTTGTTCAGTGTAAATTGAAGAAACTCTAAGTAC
ATTTTAAGAGCAAAAATAAAACATGTTCTTTGCTTAAATAATGTAAAATATCTACTCATA
AGCAGATAATTTAGGTGTAAGAAATAGTTTTTAAGATAAAGTTCCAGGCGGATTGATTTG
CCACCTACCTCTTTGCTTAAACATTCAAGGGTTTATGGGCTCATTTCACATTTGTGTGAT
GTGGATGTCATTCACTGCTTTACCTAATTCACTGAGAAAAGTTCAGCTAATCAGGTACGT
GTATGCAGCCAAAAATGAACTGTTAAGTTTATGTTTTAATTTATCAATATTTTGTCTTTT
TCCAAACATGCAATGGTTCTGATTGCCTAGATTGGAAACCTCAATTTTGTATCATGTTGC
ATATTTATGTAAAGGGAGTAAATGAAAAGCAACTCAAGAACACTGTCCATTGTTTAGCAT
ATACCCTAGCCACACTTGCTATGCCCCAGACGGTAATTTCTTTCTAACCTTTACTTATTA
CAACTAATAATAATCTTGGTTTCTTTATGGCTTTACTATTTGTTCATATGGTCTTACACT
GAACTAAAACTTCCTCTAAAGGGATTCCAGGGAGTTCTTTGCAGTAGCATGGCACATATT
TTCACATATCTAAACCGGGTGTAGTGAAGGACCATTGCTTTTACACTTGTCCCCTGAAGA
GTGCTATCTCAGAATGTTCTATATTATTTACTGACACTTGCAAATAAAATTTTCTGGTAA
ATAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTATAATTTATTTTATAGGCTGTTTTGTTCAGTGTAAATTGAAGAAACTCTAAGTAC
ATTTTAAGAGCAAAAATAAAACATGTTCTTTGCTTAAATAATGTAAAATATCTACTCATA
AGCAGATAATTTAGGTGTAAGAAATAGTTTTTAAGATAAAGTTCCAGGCGGATTGATTTG
CCACCTACCTCTTTGCTTAAACATTCAAGGGTTTATGGGCTCATTTCACATTTGTGTGAT
GTGGATGTCATTCACTGCTTTACCTAATTCACTGAGAAAAGTTCAGCTAATCAGGTACGT
GTATGCAGCCAAAAATGAACTGTTAAGTTTATGTTTTAATTTATCAATATTTTGTCTTTT
TCCAAACATGCAATGGTTCTGATTGCCTAGATTGGAAACCTCAATTTTGTATCATGTTGC
ATATTTATGTAAAGGGAGTAAATGAAAAGCAACTCAAGAACACTGTCCATTGTTTAGCAT
ATACCCTAGCCACACTTGCTATGCCCCAGACGGTAATTTCTTTCTAACCTTTACTTATTA
CAACTAATAATAATCTTGGTTTCTTTATGGCTTTACTATTTGTTCATATGGTCTTACACT
GAACTAAAACTTCCTCTAAAGGGATTCCAGGGAGTTCTTTGCAGTAGCATGGCACATATT
TTCACATATCTAAACCGGGTGTAGTGAAGGACCATTGCTTTTACACTTGTCCCCTGAAGA
GTGCTATCTCAGAATGTTCTATATTATTTACTGACACTTGCAAATAAAATTTTCTGGTAA
ATAAAAAAAAAA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               6-485, gnl|bosTau2|chr22 (18159244-18159727)
               


               
               559-786, gnl|bosTau2|chr22 (18159771-18159994)
               

               
               559-786, gnl|canFam2|chr20 (17278080-17277760)
               

               
               559-786, gnl|dasNov1|scaffold_41 (178335-178601)
               

               
               559-786, gnl|hg17|chr3 (3165955-3166347)
               

               
               559-786, gnl|Hg17|chr3 (3166315-3166114)
               

               
               559-786, gnl|panTro1|chr2 (3216536-3216929)
               

               
               559-786, gnl|rheMac2|chr2 (57857225-57856875)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-485, gnl|bosTau2|chr22 (18159244-18159727)
               


               
               559-786, gnl|bosTau2|chr22 (18159771-18159994)
               

               
               559-786, gnl|canFam2|chr20 (17278080-17277760)
               

               
               559-786, gnl|dasNov1|scaffold_41 (178335-178601)
               

               
               559-786, gnl|hg17|chr3 (3165955-3166347)
               

               
               559-786, gnl|Hg17|chr3 (3166315-3166114)
               

               
               559-786, gnl|panTro1|chr2 (3216536-3216929)
               

               
               559-786, gnl|rheMac2|chr2 (57857225-57856875)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	6-485, gnl\|bosTau2\|chr22 (18159244-18159727)

	559-786, gnl\|bosTau2\|chr22 (18159771-18159994)
	559-786, gnl\|canFam2\|chr20 (17278080-17277760)
	559-786, gnl\|dasNov1\|scaffold_41 (178335-178601)
	559-786, gnl\|hg17\|chr3 (3165955-3166347)
	559-786, gnl\|Hg17\|chr3 (3166315-3166114)
	559-786, gnl\|panTro1\|chr2 (3216536-3216929)
	559-786, gnl\|rheMac2\|chr2 (57857225-57856875)

	fce (0.271592)
	fcc (0.197785)
	sag (0.182715)
	mgm (0.180343)
	fhi (0.169578)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	sug (0.127291)
	pgl (0.118483)
	jej (0.0989218)