Non-Coding RNA Search

Ss1.1-rmgm019_e15.5

Sequence:


               
               TCACTAGAGACTTACTTTTTTTTTTTTTTTTTTAAACTTTTCCAGGCAGCTTCAGGATAT
GCAGGCAGTAGCCAGACAGGGTCATGGGAAGGGGGCCCTGCGCTTCTAAACTGAGTGGTT
GCTGGTTAGTTGGGTATTCAAAAGAGGATAAAAATCTGGTAGATTAGTTCATTCTCAGCA
TGTGTAGCTAGACATGAGTAGAGTTAACAGCATGAGAAACTGTTAGTACGCGCATACCTC
AGTTCAAACCTTTAGGGAATGATTAAAATTTAAAAAAATACATTTCACTCAGTGGCACTT
AGTCGTATGTCTGGCATGCTTAGTCTAAAGACTGTAGCAAAAAGGAAAAAAAAAATTAGA
TTTTACATATCTTTGCAGGTATCACAGCCTTGCAGAAGAACCAACTGAAAAAAAAAAATT
CTCAGGCTTTATAGCAAGTAAACTTCACTCTGATTTTTCCAGTTCTGATTCTGTATCCCT
TGGGGGTATTTCCAGTTGCTTCTTTAGGATGGGGTTTATTATGTTGTACATATATCCTGA
TGTGTCTGTGTGAATCTTTGTCTTTTTTGGGGGAGGGCGGAGGGTGGTTCTTTTTTTAGA
TATTGTTCCTAAAAAGGAATAAATGCATACACCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTAGAGACTTACTTTTTTTTTTTTTTTTTTAAACTTTTCCAGGCAGCTTCAGGATAT
GCAGGCAGTAGCCAGACAGGGTCATGGGAAGGGGGCCCTGCGCTTCTAAACTGAGTGGTT
GCTGGTTAGTTGGGTATTCAAAAGAGGATAAAAATCTGGTAGATTAGTTCATTCTCAGCA
TGTGTAGCTAGACATGAGTAGAGTTAACAGCATGAGAAACTGTTAGTACGCGCATACCTC
AGTTCAAACCTTTAGGGAATGATTAAAATTTAAAAAAATACATTTCACTCAGTGGCACTT
AGTCGTATGTCTGGCATGCTTAGTCTAAAGACTGTAGCAAAAAGGAAAAAAAAAATTAGA
TTTTACATATCTTTGCAGGTATCACAGCCTTGCAGAAGAACCAACTGAAAAAAAAAAATT
CTCAGGCTTTATAGCAAGTAAACTTCACTCTGATTTTTCCAGTTCTGATTCTGTATCCCT
TGGGGGTATTTCCAGTTGCTTCTTTAGGATGGGGTTTATTATGTTGTACATATATCCTGA
TGTGTCTGTGTGAATCTTTGTCTTTTTTGGGGGAGGGCGGAGGGTGGTTCTTTTTTTAGA
TATTGTTCCTAAAAAGGAATAAATGCATACACCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               296-439, + strand, RNAz p=0.648501

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-439, + strand, RNAz p=0.648501

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032682, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032682, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr22 (24794606-24795244)
               

               
               1-636, gnl|Hg17|chr3 (71088628-71087972)
               

               
               1-636, gnl|Mm7|chr6 (99015585-99014904)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr22 (24794606-24795244)
               

               
               1-636, gnl|Hg17|chr3 (71088628-71087972)
               

               
               1-636, gnl|Mm7|chr6 (99015585-99014904)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               nco (0.161734)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-636, gnl\|bosTau2\|chr22 (24794606-24795244)
	1-636, gnl\|Hg17\|chr3 (71088628-71087972)
	1-636, gnl\|Mm7\|chr6 (99015585-99014904)