Non-Coding RNA Search

Ss1.1-rmgm01_b7.5

Sequence:


               
               TTGAGGTAAATAGAGAACAATGAATAATTATTGCTACACCGAAGTTAAAAAAAAATCCAA
GTTGTGGATGGCTGATGTCTAAAAATGACTCAAACAAATTATCAAATTATTAATTACTAG
ATAGTCAGTTATTTTAAATCAGTTTTTCTGTGTATTGTGTAGGAACTGTAGATAAGAAGC
GATCAAATTATATAGCTATAGTACGCTTTCGTACATGACTTAGTTACGTTGAAAATAGTA
TTGCCGATATTTAGAAAGTAATTGGTTTCTCAGAGTGATATCGCTGTGCCCAAGGAAAGA
TTTTCTTCCTAACACAAAAAATATATGAATATCCTGAAGGAAACCACTGGCTTGATATTT
TTGTGACTCATGTTGCCTTTGAAACTAGTCCCCTATCACCTTGGTAATGAGCTCCGTTAC
AGAACGGGGAACATAAGAGAATGTAGGGGTAGAATACAAAACAGTAGAAAGGGAATGACT
GTTATGACAATGAGATGTATCTTGGGCAGCCTTCTTGTTTTGTAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAGGTAAATAGAGAACAATGAATAATTATTGCTACACCGAAGTTAAAAAAAAATCCAA
GTTGTGGATGGCTGATGTCTAAAAATGACTCAAACAAATTATCAAATTATTAATTACTAG
ATAGTCAGTTATTTTAAATCAGTTTTTCTGTGTATTGTGTAGGAACTGTAGATAAGAAGC
GATCAAATTATATAGCTATAGTACGCTTTCGTACATGACTTAGTTACGTTGAAAATAGTA
TTGCCGATATTTAGAAAGTAATTGGTTTCTCAGAGTGATATCGCTGTGCCCAAGGAAAGA
TTTTCTTCCTAACACAAAAAATATATGAATATCCTGAAGGAAACCACTGGCTTGATATTT
TTGTGACTCATGTTGCCTTTGAAACTAGTCCCCTATCACCTTGGTAATGAGCTCCGTTAC
AGAACGGGGAACATAAGAGAATGTAGGGGTAGAATACAAAACAGTAGAAAGGGAATGACT
GTTATGACAATGAGATGTATCTTGGGCAGCCTTCTTGTTTTGTAAACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               156-513, gnl|bosTau2|chr3 (43882161-43882531)
               

               
               156-513, gnl|Hg17|chr1 (79068787-79068348)
               

               
               156-513, gnl|Mm7|chr3 (151443587-151444005)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-513, gnl|bosTau2|chr3 (43882161-43882531)
               

               
               156-513, gnl|Hg17|chr1 (79068787-79068348)
               

               
               156-513, gnl|Mm7|chr3 (151443587-151444005)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)

	156-513, gnl\|bosTau2\|chr3 (43882161-43882531)
	156-513, gnl\|Hg17\|chr1 (79068787-79068348)
	156-513, gnl\|Mm7\|chr3 (151443587-151444005)

	mgm (0.180343)
	gul (0.177588)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	bfe (0.149858)
	lin (0.145603)
	csk (0.140746)
	kid (0.129735)