Non-Coding RNA Search

Ss1.1-rmgm024_e20.5.5

Sequence:


               
               GAAGTCTCCACAAATAAGACATACTCCTTTCTAATTTACACAGAGGTGGATATTGGAGAG
TTGCTAATGTTGAAACTCAAATGGGTCAGTGATTCATACTTCAGCTGGTCCAACTGGTGG
AGCAGCCCTGGCTTTGCTATTGAGAAGATCAGAGTGAAGGCAGGAGAGACTCAAAAAAAG
GTGATCTTCTGTTCCCGGGAGAAGAAGTCTCACCTGCAGAAAGGAAAGTCCTCTGTGGTG
TTTGTGAAATGCCACGACAAGTCTCTGAATAGAAAGTCTGGCTGAAACTGAGCAAATGTA
CAGAAGAAGGAACAGCACGTGGAGTCTATGAAGAACAAAACAAATTTTACAAAAGATGCC
CAGTGCTTTGGGAGATTAAAAGTGAATTTTCCCGAGTATTAATCCCAGCTCTAGCCTTAT
TAGTTATTTTAGGAGACAGTCTTAAACATTAAAAATGTGGCTACTTCAGTTTGAGGAGAG
AGTGGCCAAATGACACATCTTCCAACATTAGAAAACAGCAGATATGAAAAGCACTGCATT
CTGTCCTTTGGGAAAGAAAGAAGAATTGTTTGGGCTTGTGGTAAAATAATCAGCGGTCTT
TGTGTAGTAAGTTTAGCCGTAGCCTAAAATTGATGAGAACCTCATACTTTAATTGGAATT
CTGCATTTTTCAGACTGATACCTTCTCAAAATTGTCTTCAAGTCTAAATATAGAAGGTGA
TTTTTTTATAGCCTGAGTTGGACCCATGTACTTAATTGTCAAAATACTTTCTTGGAATGA
ATCTTCTCTTGCCATTGGGATGTAGCCTAGGAGTTAACCAGGAACTAGTAACTTGGAGAG
AGGAAGGGAAAACAGAGTTGATAAAGCACTGAAGCTTTAAACACTCTTGCAGTTGGTTGC
ATCATAACTAAGTTACAAATTAAAGGAGATATAAAAGTTAGATCAATTAAATCTTAAGAG
GCTTTGCAGTTTATTGGTCAGTCTTTTCCCTTCATTTTTTTTTTGCTTTGTCTCAAATTG
TATTTTAACGATGTTCTTTGGGTAGGCATTTAAAATGAGCCTGTTATCATCATCTGACAC
ATAATTTTAACTATAGAGAAAGAAATTGGTAGCATAATTTTATTATCAGATTGTCAAAAT
TACATTCGTTGATTTGAAATCCTTTAATATATGATGGTTACTGTTCAATTTTAGGCTTAC
TTCAGCCATACTTCAGTCAGTTTTTGAGCATGTTTTTCTTCTCTAATTTTGATAAGATAA
CGTGTTCAAGGTCAAATTTTGCATCATGCAAACTCCTACAAATTTTGGGCAAGGATTGTT
TTTACAATAGGAAAGTTGGGAGCTCCATCGTGGCCCAGGGGTTAACGAACCCGACTAGCA
TCCATGAGGATGTGGGTTTGATCCCTGGCCCTGCTCAGTGGGTTACGGATCCAGCGTTGC
CATGAGCTGTGGTCTAGGTCCCACATGCAGCTCAGATCCCGAGTTGCTGTGGCTGTGGTG
TAGGCCAGTGGCTACAGCTCTGATTGGACCCCTAGCCTGGGAACTTCCATATGCCGTGGG
TGCAGCCCTAAAAAGACAAAAGAAAGAAAGAAAAGTTACTGGGATACATTCATAAACAGT
GCTTAAAACCATTGTGGGCAATTAAAAGAATTCTCAATTGCTATAACCACGTGAAATGTC
ACGAGAGTTGTTGGTTTTAACAACTAGTCGAGAGTGAATGAACGATTATTTATAAACTAG
ATCTCCTATTTTCAGAATGCTTTTCTACATATTAATACAAAATGGTAAAGAGGTCAAAGG
TCTCAGAGGCTATTGCTGGGAATCCAAACTGAATGTGTGTGGGTGTCTGAACACTTATTC
ATGTATGAAGCCCCACATGTATGATTATTCCTCAGCATAGCTTGGAAGGTCAGCGATCAA
GAGCTGAACTAGAACACGTTGGAGTAGAAATTGTTCCAGTGGTGCCAGAACTTCGGCCCT
TCCTCTGAGAAATAGGGTTGTGCCTGTACAAAGTAGGATGAATGTTGTGATTGACATCTG
CCAGCTTGGAATGAATTCTCTCTAAAAATAAAATGTTGTGCGATTTGTTGTTGGCATCCC
CCTTTGTTGCTAATTCATTAATTCTCTGGATTTGGGTTTGGACCAAGGGTGCATCAATTG
AAGAAAATTGAAATCAGTGTCTGGCCCTGGGAAGTCTGGCTTCTACAAATATATATATTT
GAGCGATGCTATGCCTTGAAATGTTATTTATTAGCTGTAAATATATATGTGTCTGTGTAA
AGGGAAATTGTACATATTGGAAGGGTCGCGGGTATCTGCATTTATAGATAATTGGTGCTA
ACTTTGTACGTGTCTTTATCAGTGACAGGCTCACTGAACCAACTTACCCTTATGAAGTCA
TACAATAAAATGGGCTTAAAAAGAAAAAACCCACAAAACTTTACATAACTATGTGAAGAA
ATGGAATCTGCTTTTAATAAAATTAACAACATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGTCTCCACAAATAAGACATACTCCTTTCTAATTTACACAGAGGTGGATATTGGAGAG
TTGCTAATGTTGAAACTCAAATGGGTCAGTGATTCATACTTCAGCTGGTCCAACTGGTGG
AGCAGCCCTGGCTTTGCTATTGAGAAGATCAGAGTGAAGGCAGGAGAGACTCAAAAAAAG
GTGATCTTCTGTTCCCGGGAGAAGAAGTCTCACCTGCAGAAAGGAAAGTCCTCTGTGGTG
TTTGTGAAATGCCACGACAAGTCTCTGAATAGAAAGTCTGGCTGAAACTGAGCAAATGTA
CAGAAGAAGGAACAGCACGTGGAGTCTATGAAGAACAAAACAAATTTTACAAAAGATGCC
CAGTGCTTTGGGAGATTAAAAGTGAATTTTCCCGAGTATTAATCCCAGCTCTAGCCTTAT
TAGTTATTTTAGGAGACAGTCTTAAACATTAAAAATGTGGCTACTTCAGTTTGAGGAGAG
AGTGGCCAAATGACACATCTTCCAACATTAGAAAACAGCAGATATGAAAAGCACTGCATT
CTGTCCTTTGGGAAAGAAAGAAGAATTGTTTGGGCTTGTGGTAAAATAATCAGCGGTCTT
TGTGTAGTAAGTTTAGCCGTAGCCTAAAATTGATGAGAACCTCATACTTTAATTGGAATT
CTGCATTTTTCAGACTGATACCTTCTCAAAATTGTCTTCAAGTCTAAATATAGAAGGTGA
TTTTTTTATAGCCTGAGTTGGACCCATGTACTTAATTGTCAAAATACTTTCTTGGAATGA
ATCTTCTCTTGCCATTGGGATGTAGCCTAGGAGTTAACCAGGAACTAGTAACTTGGAGAG
AGGAAGGGAAAACAGAGTTGATAAAGCACTGAAGCTTTAAACACTCTTGCAGTTGGTTGC
ATCATAACTAAGTTACAAATTAAAGGAGATATAAAAGTTAGATCAATTAAATCTTAAGAG
GCTTTGCAGTTTATTGGTCAGTCTTTTCCCTTCATTTTTTTTTTGCTTTGTCTCAAATTG
TATTTTAACGATGTTCTTTGGGTAGGCATTTAAAATGAGCCTGTTATCATCATCTGACAC
ATAATTTTAACTATAGAGAAAGAAATTGGTAGCATAATTTTATTATCAGATTGTCAAAAT
TACATTCGTTGATTTGAAATCCTTTAATATATGATGGTTACTGTTCAATTTTAGGCTTAC
TTCAGCCATACTTCAGTCAGTTTTTGAGCATGTTTTTCTTCTCTAATTTTGATAAGATAA
CGTGTTCAAGGTCAAATTTTGCATCATGCAAACTCCTACAAATTTTGGGCAAGGATTGTT
TTTACAATAGGAAAGTTGGGAGCTCCATCGTGGCCCAGGGGTTAACGAACCCGACTAGCA
TCCATGAGGATGTGGGTTTGATCCCTGGCCCTGCTCAGTGGGTTACGGATCCAGCGTTGC
CATGAGCTGTGGTCTAGGTCCCACATGCAGCTCAGATCCCGAGTTGCTGTGGCTGTGGTG
TAGGCCAGTGGCTACAGCTCTGATTGGACCCCTAGCCTGGGAACTTCCATATGCCGTGGG
TGCAGCCCTAAAAAGACAAAAGAAAGAAAGAAAAGTTACTGGGATACATTCATAAACAGT
GCTTAAAACCATTGTGGGCAATTAAAAGAATTCTCAATTGCTATAACCACGTGAAATGTC
ACGAGAGTTGTTGGTTTTAACAACTAGTCGAGAGTGAATGAACGATTATTTATAAACTAG
ATCTCCTATTTTCAGAATGCTTTTCTACATATTAATACAAAATGGTAAAGAGGTCAAAGG
TCTCAGAGGCTATTGCTGGGAATCCAAACTGAATGTGTGTGGGTGTCTGAACACTTATTC
ATGTATGAAGCCCCACATGTATGATTATTCCTCAGCATAGCTTGGAAGGTCAGCGATCAA
GAGCTGAACTAGAACACGTTGGAGTAGAAATTGTTCCAGTGGTGCCAGAACTTCGGCCCT
TCCTCTGAGAAATAGGGTTGTGCCTGTACAAAGTAGGATGAATGTTGTGATTGACATCTG
CCAGCTTGGAATGAATTCTCTCTAAAAATAAAATGTTGTGCGATTTGTTGTTGGCATCCC
CCTTTGTTGCTAATTCATTAATTCTCTGGATTTGGGTTTGGACCAAGGGTGCATCAATTG
AAGAAAATTGAAATCAGTGTCTGGCCCTGGGAAGTCTGGCTTCTACAAATATATATATTT
GAGCGATGCTATGCCTTGAAATGTTATTTATTAGCTGTAAATATATATGTGTCTGTGTAA
AGGGAAATTGTACATATTGGAAGGGTCGCGGGTATCTGCATTTATAGATAATTGGTGCTA
ACTTTGTACGTGTCTTTATCAGTGACAGGCTCACTGAACCAACTTACCCTTATGAAGTCA
TACAATAAAATGGGCTTAAAAAGAAAAAACCCACAAAACTTTACATAACTATGTGAAGAA
ATGGAATCTGCTTTTAATAAAATTAACAACATTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YRI5_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YRI5_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               40-180, + strand, RNAz p=0.682335
               

               
               1907-2021, - strand, RNAz p=0.642777

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-180, + strand, RNAz p=0.682335
               

               
               1907-2021, - strand, RNAz p=0.642777

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-180, gnl|bosTau2|chr8 (35886519-35886698)
               

               
               1-180, gnl|Hg17|chr8 (19862696-19862875)
               

               
               1-180, gnl|Mm7|chr8 (67355910-67356089)
               


               
               277-1335, gnl|bosTau2|chr8 (35890804-35891858)
               

               
               277-1335, gnl|Hg17|chr8 (19867093-19868156)
               

               
               277-1335, gnl|Mm7|chr8 (67359256-67360841)
               


               
               1573-2496, gnl|bosTau2|chr8 (35891851-35892771)
               

               
               1573-2496, gnl|Hg17|chr8 (19868149-19869042)
               

               
               1573-2496, gnl|Mm7|chr8 (67360836-67361684)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-180, gnl|bosTau2|chr8 (35886519-35886698)
               

               
               1-180, gnl|Hg17|chr8 (19862696-19862875)
               

               
               1-180, gnl|Mm7|chr8 (67355910-67356089)
               


               
               277-1335, gnl|bosTau2|chr8 (35890804-35891858)
               

               
               277-1335, gnl|Hg17|chr8 (19867093-19868156)
               

               
               277-1335, gnl|Mm7|chr8 (67359256-67360841)
               


               
               1573-2496, gnl|bosTau2|chr8 (35891851-35892771)
               

               
               1573-2496, gnl|Hg17|chr8 (19868149-19869042)
               

               
               1573-2496, gnl|Mm7|chr8 (67360836-67361684)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               fat (6.78166)
               

               
               hea (3.47648)
               

               
               vin (2.99302)
               

               
               mgm (2.88548)
               

               
               isp (2.25564)
               

               
               ski (1.32062)
               

               
               ssp (0.948638)
               

               
               tbr (0.925069)
               

               
               mga (0.801025)
               

               
               ldo (0.776021)
               

               
               bfe (0.749288)
               

               
               mgp (0.692042)
               

               
               hlv (0.557025)
               

               
               che (0.545256)
               

               
               ret (0.514933)
               

               
               mcp (0.511945)
               

               
               pan (0.471921)
               

               
               ste (0.405625)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               spc (0.340097)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (6.78166)
               

               
               hea (3.47648)
               

               
               vin (2.99302)
               

               
               mgm (2.88548)
               

               
               isp (2.25564)
               

               
               ski (1.32062)
               

               
               ssp (0.948638)
               

               
               tbr (0.925069)
               

               
               mga (0.801025)
               

               
               ldo (0.776021)
               

               
               bfe (0.749288)
               

               
               mgp (0.692042)
               

               
               hlv (0.557025)
               

               
               che (0.545256)
               

               
               ret (0.514933)
               

               
               mcp (0.511945)
               

               
               pan (0.471921)
               

               
               ste (0.405625)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               spc (0.340097)
               

               
               cty (0.31224)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	40-180, + strand, RNAz p=0.682335
	1907-2021, - strand, RNAz p=0.642777

	1-180, gnl\|bosTau2\|chr8 (35886519-35886698)
	1-180, gnl\|Hg17\|chr8 (19862696-19862875)
	1-180, gnl\|Mm7\|chr8 (67355910-67356089)

	277-1335, gnl\|bosTau2\|chr8 (35890804-35891858)
	277-1335, gnl\|Hg17\|chr8 (19867093-19868156)
	277-1335, gnl\|Mm7\|chr8 (67359256-67360841)

	1573-2496, gnl\|bosTau2\|chr8 (35891851-35892771)
	1573-2496, gnl\|Hg17\|chr8 (19868149-19869042)
	1573-2496, gnl\|Mm7\|chr8 (67360836-67361684)

	fat (6.78166)
	hea (3.47648)
	vin (2.99302)
	mgm (2.88548)
	isp (2.25564)
	ski (1.32062)
	ssp (0.948638)
	tbr (0.925069)
	mga (0.801025)
	ldo (0.776021)
	bfe (0.749288)
	mgp (0.692042)
	hlv (0.557025)
	che (0.545256)
	ret (0.514933)
	mcp (0.511945)
	pan (0.471921)
	ste (0.405625)
	tra (0.369276)
	nep (0.36785)
	sag (0.36543)
	med (0.348756)
	jca (0.34188)
	spc (0.340097)
	cty (0.31224)
	csk (0.281492)
	cga (0.279096)
	ova (0.258264)
	mas (0.210305)
	gul (0.177588)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	lin (0.145603)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	cly (0.120642)
	jej (0.0989218)