Non-Coding RNA Search

Ss1.1-rmgm024_n20.5

Sequence:


               
               TCCTGAAAAATAATATACTATGCAGTAACTTCAAATTCCACATGTCTGAAAGAAACCTGT
TCATATCCCTGAGGTAGATTGCTGAGAAATTACAGTTGCTCAAGCCTTTTCTTCCTTCAA
ATTGTGAACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGAAAAATAATATACTATGCAGTAACTTCAAATTCCACATGTCTGAAAGAAACCTGT
TCATATCCCTGAGGTAGATTGCTGAGAAATTACAGTTGCTCAAGCCTTTTCTTCCTTCAA
ATTGTGAACTTA

Aligned organism(s): 27 entry(ies)

More info

Aligned organism(s): 27 entry(ies)

Help | Less info


               
               2-132, gnl|bosTau2|chr22 (33172784-33172914)
               

               
               2-132, gnl|canFam2|chr20 (36131382-36130866)
               

               
               2-132, gnl|canFam2|chr20 (36131265-36130860)
               

               
               2-132, gnl|danRer3|chrUn (124703214-124702643)
               

               
               2-132, gnl|dasNov1|scaffold_56008 (14383-14894)
               

               
               2-132, gnl|dasNov1|scaffold_56008 (14508-14910)
               

               
               2-132, gnl|echTel1|scaffold_317294 (34180-34744)
               

               
               2-132, gnl|echTel1|scaffold_317294 (34314-34759)
               

               
               2-132, gnl|galGal2|chr12 (8693849-8694324)
               

               
               2-132, gnl|hg17|chr3 (57278758-57279254)
               

               
               2-132, gnl|Hg17|chr3 (57278941-57279056)
               

               
               2-132, gnl|hg17|chr6 (159060596-159060985)
               

               
               2-132, gnl|loxAfr1|scaffold_9513 (57929-58449)
               

               
               2-132, gnl|loxAfr1|scaffold_9513 (58051-58449)
               

               
               2-132, gnl|mm7|chr14 (24356494-24356020)
               

               
               2-132, gnl|mm7|chr14 (24356412-24356004)
               

               
               2-132, gnl|Mm7|chr14 (24356344-24356215)
               

               
               2-132, gnl|monDom2|scaffold_5 (2277011-2277513)
               

               
               2-132, gnl|monDom2|scaffold_5 (2277117-2277528)
               

               
               2-132, gnl|oryCun1|scaffold_165275 (2127-1542)
               

               
               2-132, gnl|oryCun1|scaffold_165275 (1914-1526)
               

               
               2-132, gnl|panTro1|chr2 (58946218-58946714)
               

               
               2-132, gnl|panTro1|chr5 (162899435-162899830)
               

               
               2-132, gnl|rheMac2|chr2 (79104136-79103653)
               

               
               2-132, gnl|rheMac2|chr4 (104260299-104259904)
               

               
               2-132, gnl|rn3|chr16 (2182807-2182342)
               

               
               2-132, gnl|rn3|chr16 (2182733-2182326)

Aligned organism(s): 27 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-132, gnl|bosTau2|chr22 (33172784-33172914)
               

               
               2-132, gnl|canFam2|chr20 (36131382-36130866)
               

               
               2-132, gnl|canFam2|chr20 (36131265-36130860)
               

               
               2-132, gnl|danRer3|chrUn (124703214-124702643)
               

               
               2-132, gnl|dasNov1|scaffold_56008 (14383-14894)
               

               
               2-132, gnl|dasNov1|scaffold_56008 (14508-14910)
               

               
               2-132, gnl|echTel1|scaffold_317294 (34180-34744)
               

               
               2-132, gnl|echTel1|scaffold_317294 (34314-34759)
               

               
               2-132, gnl|galGal2|chr12 (8693849-8694324)
               

               
               2-132, gnl|hg17|chr3 (57278758-57279254)
               

               
               2-132, gnl|Hg17|chr3 (57278941-57279056)
               

               
               2-132, gnl|hg17|chr6 (159060596-159060985)
               

               
               2-132, gnl|loxAfr1|scaffold_9513 (57929-58449)
               

               
               2-132, gnl|loxAfr1|scaffold_9513 (58051-58449)
               

               
               2-132, gnl|mm7|chr14 (24356494-24356020)
               

               
               2-132, gnl|mm7|chr14 (24356412-24356004)
               

               
               2-132, gnl|Mm7|chr14 (24356344-24356215)
               

               
               2-132, gnl|monDom2|scaffold_5 (2277011-2277513)
               

               
               2-132, gnl|monDom2|scaffold_5 (2277117-2277528)
               

               
               2-132, gnl|oryCun1|scaffold_165275 (2127-1542)
               

               
               2-132, gnl|oryCun1|scaffold_165275 (1914-1526)
               

               
               2-132, gnl|panTro1|chr2 (58946218-58946714)
               

               
               2-132, gnl|panTro1|chr5 (162899435-162899830)
               

               
               2-132, gnl|rheMac2|chr2 (79104136-79103653)
               

               
               2-132, gnl|rheMac2|chr4 (104260299-104259904)
               

               
               2-132, gnl|rn3|chr16 (2182807-2182342)
               

               
               2-132, gnl|rn3|chr16 (2182733-2182326)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mgm (0.180343)
               

               
               isp (0.150376)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)
               

               
               isp (0.150376)

	2-132, gnl\|bosTau2\|chr22 (33172784-33172914)
	2-132, gnl\|canFam2\|chr20 (36131382-36130866)
	2-132, gnl\|canFam2\|chr20 (36131265-36130860)
	2-132, gnl\|danRer3\|chrUn (124703214-124702643)
	2-132, gnl\|dasNov1\|scaffold_56008 (14383-14894)
	2-132, gnl\|dasNov1\|scaffold_56008 (14508-14910)
	2-132, gnl\|echTel1\|scaffold_317294 (34180-34744)
	2-132, gnl\|echTel1\|scaffold_317294 (34314-34759)
	2-132, gnl\|galGal2\|chr12 (8693849-8694324)
	2-132, gnl\|hg17\|chr3 (57278758-57279254)
	2-132, gnl\|Hg17\|chr3 (57278941-57279056)
	2-132, gnl\|hg17\|chr6 (159060596-159060985)
	2-132, gnl\|loxAfr1\|scaffold_9513 (57929-58449)
	2-132, gnl\|loxAfr1\|scaffold_9513 (58051-58449)
	2-132, gnl\|mm7\|chr14 (24356494-24356020)
	2-132, gnl\|mm7\|chr14 (24356412-24356004)
	2-132, gnl\|Mm7\|chr14 (24356344-24356215)
	2-132, gnl\|monDom2\|scaffold_5 (2277011-2277513)
	2-132, gnl\|monDom2\|scaffold_5 (2277117-2277528)
	2-132, gnl\|oryCun1\|scaffold_165275 (2127-1542)
	2-132, gnl\|oryCun1\|scaffold_165275 (1914-1526)
	2-132, gnl\|panTro1\|chr2 (58946218-58946714)
	2-132, gnl\|panTro1\|chr5 (162899435-162899830)
	2-132, gnl\|rheMac2\|chr2 (79104136-79103653)
	2-132, gnl\|rheMac2\|chr4 (104260299-104259904)
	2-132, gnl\|rn3\|chr16 (2182807-2182342)
	2-132, gnl\|rn3\|chr16 (2182733-2182326)