Non-Coding RNA Search

Ss1.1-rmgm025_j23.5

Sequence:


               
               CAAACATTTAATGAATAGTTTTATTTTTAGCATTATAATATAGATAAAGATATCCATGTT
CCTAAGCTAAACAAGTAGATAACAGGACTTTGTCACTGTGGACAGAACCTGTAGAATAAC
GGTATATCAAATGTTAATCTGACAAAATAGGAAAACCTGTCAATCAAATTTGCTATTCCC
TATTTTTAAATACCGAGGGTGGGGGGAATAGCAAATTTGTCTGTAATGTAATATTGGTAG
TGTAAAAAAAATTCCCATATCACTGGTTGGGGGGCGGTAGTAGTTTAAAACCTTGTTTTA
TATACATCTTGCCTACAGAAAATCAGTACCTATTGCTTCATGTAGTAGCTCATTCTAGTA
AATTTGAAAATGAGATAACAAATAAAAATAGAAAACATTCCAGTTTTTTGGATTGGAGAG
GAGGTGGTGAAAAACAGCATTAAAGCATTGAAATTAGATTGACACAGGAATATAGCTAAG
TTATTTCACTCATAAACTGGTTAAATATTCCTACCAAAAAGATTAAAATTGGATCAAAAA
TCAATCTCTAACCCTGGATACATTAGTATAAAACAAAGGATAAAAGAGTTTAAAGACAAT
GGAAACTATAAGTCATAGAAATGGATGTAGGGAGCAATATTTTTATTAGAACTCAAGCTT
ATAAAATATAAGTTCTTGTGATATTTAAGAAGCTTTATGTGGTAAATAAATGGCATTCAT
ATGTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACATTTAATGAATAGTTTTATTTTTAGCATTATAATATAGATAAAGATATCCATGTT
CCTAAGCTAAACAAGTAGATAACAGGACTTTGTCACTGTGGACAGAACCTGTAGAATAAC
GGTATATCAAATGTTAATCTGACAAAATAGGAAAACCTGTCAATCAAATTTGCTATTCCC
TATTTTTAAATACCGAGGGTGGGGGGAATAGCAAATTTGTCTGTAATGTAATATTGGTAG
TGTAAAAAAAATTCCCATATCACTGGTTGGGGGGCGGTAGTAGTTTAAAACCTTGTTTTA
TATACATCTTGCCTACAGAAAATCAGTACCTATTGCTTCATGTAGTAGCTCATTCTAGTA
AATTTGAAAATGAGATAACAAATAAAAATAGAAAACATTCCAGTTTTTTGGATTGGAGAG
GAGGTGGTGAAAAACAGCATTAAAGCATTGAAATTAGATTGACACAGGAATATAGCTAAG
TTATTTCACTCATAAACTGGTTAAATATTCCTACCAAAAAGATTAAAATTGGATCAAAAA
TCAATCTCTAACCCTGGATACATTAGTATAAAACAAAGGATAAAAGAGTTTAAAGACAAT
GGAAACTATAAGTCATAGAAATGGATGTAGGGAGCAATATTTTTATTAGAACTCAAGCTT
ATAAAATATAAGTTCTTGTGATATTTAAGAAGCTTTATGTGGTAAATAAATGGCATTCAT
ATGTAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               45-732, gnl|bosTau2|chr11 (66914418-66913744)
               

               
               45-732, gnl|Hg17|chr8 (92150164-92149469)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-732, gnl|bosTau2|chr11 (66914418-66913744)
               

               
               45-732, gnl|Hg17|chr8 (92150164-92149469)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               mgm (0.360685)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fco (0.157208)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.360685)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               fco (0.157208)

	45-732, gnl\|bosTau2\|chr11 (66914418-66913744)
	45-732, gnl\|Hg17\|chr8 (92150164-92149469)

	mgm (0.360685)
	cbe (0.239234)
	mgp (0.230681)
	fcc (0.197785)
	aor (0.195274)
	fco (0.157208)