Non-Coding RNA Search

Ss1.1-rmgm028_d22.5

Sequence:


               
               TCCCGGTCGGATAGTGGCTCGGCACGGAGGAAGTTCATCCATGGCTGGCTGATATGCATC
TTCTTGCCATTCGTGTTGAGCCAGCTGGAGCCAAGCTGCAAAGCGGAGCTGCNTGAGTTT
GAAGGAGAGGTCCTTGCTATGGGCAGCCATGCCATGACCATTGAAGGCATCTATGAGGAT
GTCGTCCGGGGTGTCATGCTGCAAAGGATCAATCAAGAACTGAAAAAGGCCCTCGGTGCC
AGCAACGTGTCATGCACTCTGGATGACTGTTCAGAGGCTCCATGGGACCTCTGCTTTCCA
GAAAAGTCATCTGTCCACTGGAGTTTGGCAGCTTCTCCACATCACAAGCCTTCCAGCTGC
TTCCGGAGGAGGTTCCGAGAGGGATTTCCCCAGTGGTTTTCTCAGTTCAGCTTTCAGAGG
GGAACATGCACACTCCATGGTTTCCTCCTATTTTGCCATAGAATTTTCATCTTCCCCCAG
TAGAATGAGATTTTTCTCATCTTTCCTGAAAGCTCCTTGCACAATGAGGACACCCTATCT
GTACCTTGAATTTTACTCAGTATTGAGCCTCCCCCAACCACTCATGTTATTAAATACACA
TCTGAGCATCATTCTTAAAACTTAATTTTTAAGAATGACACAAAAACAATTCGAAAATAC
ATTTGATTCTTGGAAAACAACTCCCTTGTGGGATTTCTATGGAACTGTCCACCTTCCCTG
CGGATCATACGCTCAGCATGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGTCGGATAGTGGCTCGGCACGGAGGAAGTTCATCCATGGCTGGCTGATATGCATC
TTCTTGCCATTCGTGTTGAGCCAGCTGGAGCCAAGCTGCAAAGCGGAGCTGCNTGAGTTT
GAAGGAGAGGTCCTTGCTATGGGCAGCCATGCCATGACCATTGAAGGCATCTATGAGGAT
GTCGTCCGGGGTGTCATGCTGCAAAGGATCAATCAAGAACTGAAAAAGGCCCTCGGTGCC
AGCAACGTGTCATGCACTCTGGATGACTGTTCAGAGGCTCCATGGGACCTCTGCTTTCCA
GAAAAGTCATCTGTCCACTGGAGTTTGGCAGCTTCTCCACATCACAAGCCTTCCAGCTGC
TTCCGGAGGAGGTTCCGAGAGGGATTTCCCCAGTGGTTTTCTCAGTTCAGCTTTCAGAGG
GGAACATGCACACTCCATGGTTTCCTCCTATTTTGCCATAGAATTTTCATCTTCCCCCAG
TAGAATGAGATTTTTCTCATCTTTCCTGAAAGCTCCTTGCACAATGAGGACACCCTATCT
GTACCTTGAATTTTACTCAGTATTGAGCCTCCCCCAACCACTCATGTTATTAAATACACA
TCTGAGCATCATTCTTAAAACTTAATTTTTAAGAATGACACAAAAACAATTCGAAAATAC
ATTTGATTCTTGGAAAACAACTCCCTTGTGGGATTTCTATGGAACTGTCCACCTTCCCTG
CGGATCATACGCTCAGCATGTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-106, + strand, RNAz p=0.726379

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-106, + strand, RNAz p=0.726379

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-106, gnl|bosTau2|chr7 (4852988-4852885)
               

               
               3-106, gnl|canFam2|chr20 (48283648-48283243)
               

               
               3-106, gnl|echTel1|scaffold_225222 (5050-4669)
               

               
               3-106, gnl|hg17|chr19 (17515082-17515492)
               

               
               3-106, gnl|Hg17|chr19 (17515338-17515441)
               

               
               3-106, gnl|loxAfr1|scaffold_18018 (30341-29951)
               

               
               3-106, gnl|mm7|chr8 (70071865-70072229)
               

               
               3-106, gnl|Mm7|chr8 (70072094-70072197)
               

               
               3-106, gnl|panTro1|chr20_random (4761398-4760988)
               

               
               3-106, gnl|rheMac2|chr19 (17101436-17101854)
               

               
               3-106, gnl|rn3|chr16 (18805565-18805919)
               


               
               288-650, gnl|bosTau2|chr7 (4847099-4846724)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-106, gnl|bosTau2|chr7 (4852988-4852885)
               

               
               3-106, gnl|canFam2|chr20 (48283648-48283243)
               

               
               3-106, gnl|echTel1|scaffold_225222 (5050-4669)
               

               
               3-106, gnl|hg17|chr19 (17515082-17515492)
               

               
               3-106, gnl|Hg17|chr19 (17515338-17515441)
               

               
               3-106, gnl|loxAfr1|scaffold_18018 (30341-29951)
               

               
               3-106, gnl|mm7|chr8 (70071865-70072229)
               

               
               3-106, gnl|Mm7|chr8 (70072094-70072197)
               

               
               3-106, gnl|panTro1|chr20_random (4761398-4760988)
               

               
               3-106, gnl|rheMac2|chr19 (17101436-17101854)
               

               
               3-106, gnl|rn3|chr16 (18805565-18805919)
               


               
               288-650, gnl|bosTau2|chr7 (4847099-4846724)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mgm (0.360685)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.360685)
               

               
               sin (0.174948)

	3-106, gnl\|bosTau2\|chr7 (4852988-4852885)
	3-106, gnl\|canFam2\|chr20 (48283648-48283243)
	3-106, gnl\|echTel1\|scaffold_225222 (5050-4669)
	3-106, gnl\|hg17\|chr19 (17515082-17515492)
	3-106, gnl\|Hg17\|chr19 (17515338-17515441)
	3-106, gnl\|loxAfr1\|scaffold_18018 (30341-29951)
	3-106, gnl\|mm7\|chr8 (70071865-70072229)
	3-106, gnl\|Mm7\|chr8 (70072094-70072197)
	3-106, gnl\|panTro1\|chr20_random (4761398-4760988)
	3-106, gnl\|rheMac2\|chr19 (17101436-17101854)
	3-106, gnl\|rn3\|chr16 (18805565-18805919)

	288-650, gnl\|bosTau2\|chr7 (4847099-4846724)