Ss1.1-rmgm02_m23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTCACGGTGATGCTGGACTCAGTGACACACGGTACCTTCCTGCCCAACGCGAACTTCT GCGACCCTCTGATGTCGTGGACCAACCTGTTCAGCAGTGAAGAGTACTATCCTGCCTTTG AGCATCAGACAGCCTGTGACCCCTACTGGACGTCTGTCCACCCCGAGTACTGGACGAAGC GCCACGTCTGGGAATGGCTCCAGTTCTGCTGCGACCAGTACAAGCTGGACGCCAACTGCA TCTCCTTCTGCCATTTCAACATCAGCGGCCTGCAGCTGTGCAGCATGACACAGGAGGAGT TCATCGAGGCAGCCGGCATCTGCGGAGAGTACCTGTACTTCATCCTCCAGAACATTCGCT CACAAGGTTACTCCTTTTTTAATGATGCTGAAGAGACCAAGGCTGCCATCAAAGACTATG CTGACTCCAGTTGCTTGAAAACAAGTGGCATCAAAAGCCAAGACTGTCACAATCATAGTC GAACAAGCCTCCAAAGTTCTCATCTATGGGAATTTGTACGAGACCTGCTTCTATCTCCTG AAGAAAACTGTGGCATCCTGGAATGGGAAGATAGGGAACAAGGTATTTTTCGGGTGGTTA AATCCGAGGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAAAATGACAGGATGACGTATG AAAAGTTGAGCAGAGCTCTGAGGTACTACTACAAAACAGGAATTTTGGAACGGGTCGACC GAAGATTAGTGTACAAATTTGGAAAAAATGCACACGGGTGGCAGGAAGACAAGCTATGAT CTGCTCCGCCATCGAGCTCATTTTTTGGATTTCTGTCTCTTAAAAAACAAGCAGATTGCA ATAGACATTTGAAAGTTGTTTGGTTTTTATTTTTTAATGTGCAAACATGCTGATAAAATT TCTCCCCATCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTCACGGTGATGCTGGACTCAGTGACACACGGTACCTTCCTGCCCAACGCGAACTTCT GCGACCCTCTGATGTCGTGGACCAACCTGTTCAGCAGTGAAGAGTACTATCCTGCCTTTG AGCATCAGACAGCCTGTGACCCCTACTGGACGTCTGTCCACCCCGAGTACTGGACGAAGC GCCACGTCTGGGAATGGCTCCAGTTCTGCTGCGACCAGTACAAGCTGGACGCCAACTGCA TCTCCTTCTGCCATTTCAACATCAGCGGCCTGCAGCTGTGCAGCATGACACAGGAGGAGT TCATCGAGGCAGCCGGCATCTGCGGAGAGTACCTGTACTTCATCCTCCAGAACATTCGCT CACAAGGTTACTCCTTTTTTAATGATGCTGAAGAGACCAAGGCTGCCATCAAAGACTATG CTGACTCCAGTTGCTTGAAAACAAGTGGCATCAAAAGCCAAGACTGTCACAATCATAGTC GAACAAGCCTCCAAAGTTCTCATCTATGGGAATTTGTACGAGACCTGCTTCTATCTCCTG AAGAAAACTGTGGCATCCTGGAATGGGAAGATAGGGAACAAGGTATTTTTCGGGTGGTTA AATCCGAGGCCCTGGCAAAGATGTGGGGACAAAGGAAGAAAAATGACAGGATGACGTATG AAAAGTTGAGCAGAGCTCTGAGGTACTACTACAAAACAGGAATTTTGGAACGGGTCGACC GAAGATTAGTGTACAAATTTGGAAAAAATGCACACGGGTGGCAGGAAGACAAGCTATGAT CTGCTCCGCCATCGAGCTCATTTTTTGGATTTCTGTCTCTTAAAAAACAAGCAGATTGCA ATAGACATTTGAAAGTTGTTTGGTTTTTATTTTTTAATGTGCAAACATGCTGATAAAATT TCTCCCCATCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 130-368, gnl|bosTau2|chr15 (39379391-39379153) | |
| 130-368, gnl|Hg17|chr11 (34471838-34471600) | |
| 130-368, gnl|Mm7|chr2 (103289981-103290219) | |
| 487-685, gnl|bosTau2|chr15 (39367254-39367056) | |
| 487-685, gnl|canFam2|chr18 (36393801-36393557) | |
| 487-685, gnl|danRer3|chr25 (7021623-7021415) | |
| 487-685, gnl|dasNov1|scaffold_9601 (42654-42409) | |
| 487-685, gnl|echTel1|scaffold_91187 (624-841) | |
| 487-685, gnl|fr1|chrUn (165643092-165643278) | |
| 487-685, gnl|galGal2|chr5 (15649851-15650080) | |
| 487-685, gnl|hg17|chr11 (34458877-34459122) | |
| 487-685, gnl|Hg17|chr11 (34459090-34458892) | |
| 487-685, gnl|loxAfr1|scaffold_15939 (20435-20195) | |
| 487-685, gnl|mm7|chr2 (103299907-103299654) | |
| 487-685, gnl|Mm7|chr2 (103299692-103299890) | |
| 487-685, gnl|monDom2|scaffold_10 (80727397-80727629) | |
| 487-685, gnl|oryCun1|scaffold_185009 (55648-55460) | |
| 487-685, gnl|panTro1|chr9 (34846675-34846920) | |
| 487-685, gnl|rheMac2|chr14 (37346198-37345954) | |
| 487-685, gnl|rn3|chr3 (88589841-88590093) | |
| 487-685, gnl|tetNig1|chr13 (5410752-5410565) | |
| 487-685, gnl|xenTro1|scaffold_266 (1484994-1484798) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-368, gnl|bosTau2|chr15 (39379391-39379153) | |
| 130-368, gnl|Hg17|chr11 (34471838-34471600) | |
| 130-368, gnl|Mm7|chr2 (103289981-103290219) | |
| 487-685, gnl|bosTau2|chr15 (39367254-39367056) | |
| 487-685, gnl|canFam2|chr18 (36393801-36393557) | |
| 487-685, gnl|danRer3|chr25 (7021623-7021415) | |
| 487-685, gnl|dasNov1|scaffold_9601 (42654-42409) | |
| 487-685, gnl|echTel1|scaffold_91187 (624-841) | |
| 487-685, gnl|fr1|chrUn (165643092-165643278) | |
| 487-685, gnl|galGal2|chr5 (15649851-15650080) | |
| 487-685, gnl|hg17|chr11 (34458877-34459122) | |
| 487-685, gnl|Hg17|chr11 (34459090-34458892) | |
| 487-685, gnl|loxAfr1|scaffold_15939 (20435-20195) | |
| 487-685, gnl|mm7|chr2 (103299907-103299654) | |
| 487-685, gnl|Mm7|chr2 (103299692-103299890) | |
| 487-685, gnl|monDom2|scaffold_10 (80727397-80727629) | |
| 487-685, gnl|oryCun1|scaffold_185009 (55648-55460) | |
| 487-685, gnl|panTro1|chr9 (34846675-34846920) | |
| 487-685, gnl|rheMac2|chr14 (37346198-37345954) | |
| 487-685, gnl|rn3|chr3 (88589841-88590093) | |
| 487-685, gnl|tetNig1|chr13 (5410752-5410565) | |
| 487-685, gnl|xenTro1|scaffold_266 (1484994-1484798) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| mga (0.801025) | |
| tes (0.623441) | |
| mcp (0.511945) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ski (0.146735) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.801025) | |
| tes (0.623441) | |
| mcp (0.511945) | |
| cte (0.29274) | |
| mgp (0.230681) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ski (0.146735) |