Ss1.1-rmgm033_l5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTCTCGAGGTGGCACACCCTGGTGTCTGCCAGGCTTTAGCGCCTCTGATGCTGTAGGT AGATGTTTTTGGTTACAGATCCTCTTGATAGTAACGGATGATGTTTTTGCACATGGGTTG GGGGGGCTTCCTTTTTATCTTAATACGTACTGATCTCCCTGCACAGGAGCTTCTTCGTGG GGTAGGACTATCCTAAGCGGTAGCCTTCTGAGTAGCAGTATGAGTTGACATTCAACTGCT TTTAACTATTCAAGCTACCTTTTCTACTACACCTTGAAAACTAGAGTCTTCAAGTAACAC TCTCCAGAAAGTCAATACTTTGATAATGTAAACGTTTTATGCACCATAGCAGAAAGAGTA TGTTGGAATTGGTTAGTTTCTTACGGTAGTTTCACCTCCCAATAGAAAGCCTCGCCTCAC TGACCTCTTGTTGGAAAATCACACGTACGCGTCTTACAGGTCATCTTTTCCGTTCTCTCA GATGTATGTCTCTTACTTAACTGACTCTAAGAATGAAGCTGTCACCACAGATGAGTCCTC ACTAGCAGGGAGCCTGTCTGCTCAAGTCTACTCCCAGTTTGACCCTTGGATGTCAGAGCC CCGTCATTACATGTCACATTCAGTGTTTCTGCCTTAAGAGCGAATGTCCTACACAGAGTT TTGGATGCAGTGTATAAATTATCCAAGGCAGTGACTTCAGCGTTAGAGATATTGTTAGCT TTAAAGTCGTCTACGTTTCTTTAAACGTCTTCATTGGGTTGTTTGCTGCTGTTCTTTGTA AGGACCCATATCCTTCAGTAAACTACATTTTTTAACTTTTCCATAAGCTGATTTTGATTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTCTCGAGGTGGCACACCCTGGTGTCTGCCAGGCTTTAGCGCCTCTGATGCTGTAGGT AGATGTTTTTGGTTACAGATCCTCTTGATAGTAACGGATGATGTTTTTGCACATGGGTTG GGGGGGCTTCCTTTTTATCTTAATACGTACTGATCTCCCTGCACAGGAGCTTCTTCGTGG GGTAGGACTATCCTAAGCGGTAGCCTTCTGAGTAGCAGTATGAGTTGACATTCAACTGCT TTTAACTATTCAAGCTACCTTTTCTACTACACCTTGAAAACTAGAGTCTTCAAGTAACAC TCTCCAGAAAGTCAATACTTTGATAATGTAAACGTTTTATGCACCATAGCAGAAAGAGTA TGTTGGAATTGGTTAGTTTCTTACGGTAGTTTCACCTCCCAATAGAAAGCCTCGCCTCAC TGACCTCTTGTTGGAAAATCACACGTACGCGTCTTACAGGTCATCTTTTCCGTTCTCTCA GATGTATGTCTCTTACTTAACTGACTCTAAGAATGAAGCTGTCACCACAGATGAGTCCTC ACTAGCAGGGAGCCTGTCTGCTCAAGTCTACTCCCAGTTTGACCCTTGGATGTCAGAGCC CCGTCATTACATGTCACATTCAGTGTTTCTGCCTTAAGAGCGAATGTCCTACACAGAGTT TTGGATGCAGTGTATAAATTATCCAAGGCAGTGACTTCAGCGTTAGAGATATTGTTAGCT TTAAAGTCGTCTACGTTTCTTTAAACGTCTTCATTGGGTTGTTTGCTGCTGTTCTTTGTA AGGACCCATATCCTTCAGTAAACTACATTTTTTAACTTTTCCATAAGCTGATTTTGATTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 154-263, - strand, RNAz p=0.841697 | |
| 159-315, + strand, RNAz p=0.985383 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 154-263, - strand, RNAz p=0.841697 | |
| 159-315, + strand, RNAz p=0.985383 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 206-268, + strand, RNAmicro p=0.905973 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_016076, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 7-837, gnl|bosTau2|chr16 (18265360-18266193) | |
| 7-837, gnl|canFam2|chr7 (38702097-38702896) | |
| 7-837, gnl|canFam2|chr7 (38702063-38702815) | |
| 7-837, gnl|dasNov1|scaffold_116100 (2337-1584) | |
| 7-837, gnl|dasNov1|scaffold_6169 (97082-97881) | |
| 7-837, gnl|echTel1|scaffold_159023 (3722-2909) | |
| 7-837, gnl|echTel1|scaffold_159023 (3747-2985) | |
| 7-837, gnl|hg17|chr1 (241195772-241196581) | |
| 7-837, gnl|Hg17|chr1 (241195804-241196633) | |
| 7-837, gnl|hg17|chr4 (105248408-105249170) | |
| 7-837, gnl|loxAfr1|scaffold_12324 (33174-32362) | |
| 7-837, gnl|loxAfr1|scaffold_12324 (33204-32434) | |
| 7-837, gnl|mm7|chr1 (178228893-178229624) | |
| 7-837, gnl|mm7|chr1 (178228851-178229581) | |
| 7-837, gnl|Mm7|chr1 (178228923-178229675) | |
| 7-837, gnl|monDom2|scaffold_13 (38810547-38809540) | |
| 7-837, gnl|oryCun1|scaffold_176483 (9173-9990) | |
| 7-837, gnl|oryCun1|scaffold_176483 (9114-9905) | |
| 7-837, gnl|panTro1|chr1 (225201600-225202409) | |
| 7-837, gnl|panTro1|chr3 (121640621-121641379) | |
| 7-837, gnl|rheMac2|chr1 (212367679-212366875) | |
| 7-837, gnl|rheMac2|chr5 (97007864-97008709) | |
| 7-837, gnl|rn3|chr13 (94091973-94092692) | |
| 7-837, gnl|rn3|chr13 (94091931-94092648) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-837, gnl|bosTau2|chr16 (18265360-18266193) | |
| 7-837, gnl|canFam2|chr7 (38702097-38702896) | |
| 7-837, gnl|canFam2|chr7 (38702063-38702815) | |
| 7-837, gnl|dasNov1|scaffold_116100 (2337-1584) | |
| 7-837, gnl|dasNov1|scaffold_6169 (97082-97881) | |
| 7-837, gnl|echTel1|scaffold_159023 (3722-2909) | |
| 7-837, gnl|echTel1|scaffold_159023 (3747-2985) | |
| 7-837, gnl|hg17|chr1 (241195772-241196581) | |
| 7-837, gnl|Hg17|chr1 (241195804-241196633) | |
| 7-837, gnl|hg17|chr4 (105248408-105249170) | |
| 7-837, gnl|loxAfr1|scaffold_12324 (33174-32362) | |
| 7-837, gnl|loxAfr1|scaffold_12324 (33204-32434) | |
| 7-837, gnl|mm7|chr1 (178228893-178229624) | |
| 7-837, gnl|mm7|chr1 (178228851-178229581) | |
| 7-837, gnl|Mm7|chr1 (178228923-178229675) | |
| 7-837, gnl|monDom2|scaffold_13 (38810547-38809540) | |
| 7-837, gnl|oryCun1|scaffold_176483 (9173-9990) | |
| 7-837, gnl|oryCun1|scaffold_176483 (9114-9905) | |
| 7-837, gnl|panTro1|chr1 (225201600-225202409) | |
| 7-837, gnl|panTro1|chr3 (121640621-121641379) | |
| 7-837, gnl|rheMac2|chr1 (212367679-212366875) | |
| 7-837, gnl|rheMac2|chr5 (97007864-97008709) | |
| 7-837, gnl|rn3|chr13 (94091973-94092692) | |
| 7-837, gnl|rn3|chr13 (94091931-94092648) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| mgm (0.180343) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| bla (0.124347) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.180343) | |
| isp (0.150376) | |
| ski (0.146735) | |
| ssp (0.13552) | |
| bla (0.124347) |