Non-Coding RNA Search

Ss1.1-rmgm036_a7.5

Sequence:


               
               ACAGCACAGAAAAATAACAAAAAACTTAAAGCACTCTATGAACAGTCACTTCACATCAAG
TCTGCCATCCCTCATCCACTGATCATGGGAGTCATCAGAGAATGTGGTGGTAAAATGCAC
TTGAGAGAAGGTGAATTTGAAAAGGCACACACTGATTTTTTTGAAGCCTTCAAGAATTAT
GATGAATCAGGAAGTCCAAGACGAACCACTTGCTTAAAATACTTGGTTTTAGCAAATATG
CTAATGAAATCGGGAATAAACCCATTTGATTCACAGGAGGCCAAACCTTACAAAAATGAT
CCAGAAATTCTAGCAATGACGAATTTAGTAAGTGCCTATCAGAATAATGACATCACTGAA
TTTGAAAAGATTCTTAAAACCAATCATAGCAACATCATGGATGATCCTTTCATAAGGGAA
CACATTGAAGAGCTTTTGAGAAACATCAGAACACAAGTGCTTATAAAATTAATTAAGCCT
TACACAAGAATACATATTCCTTTTATTTCTAAGGAGTTAAACATAGATGTAGCTGATGTG
GAGAGCTTGCTGGTACAGTGCATATTGGATAACACTATTCATGGCCGAATTGATCAAGTC
AACCAACTCCTTGAATTGGATCATCAGAAGAGGGGTGGTGCCCGATATACTGCACTAGAT
AAATGGACCAACCAACTAAATTCTCTCAACCAGGCTGTAGTCAGTAAACTGGCTTAACAG
AGAACAAGCTTTTACATACGTACTTAAGGCAACAGTGCAGAGATGTAATCCTTAAAAGAA
CTGGGAATGGCAAAACTACTGTCGGTTGATGTGTCCTGAAAATTATTGGAGTTATGGCAG
AAGTGCTTTTTTTGATCAACTGGTTTGTGTTTTGCTGCTGCATTTATCCCAAGAAAAACA
GCTTTAATCTCCAGAAGAAAACCAAAATGCCATGGGATTTATGCTCTATCTTGCCCTAAA
ACATACAACATCATAGTAATTTGTCATGGGCAACATGACCAGAGAGAAGATTTTTGTCAT
GATTTTAAATACACTGACATGCTACTGTTGGTTAAATTTAAACATGTTTTACCTGCAGAA
ATTCTCTCACAAATAACCTGCAATAACTTGAAATGCATACCCTTTTGAACACTTCCTTTT
CTCATGTATAAATTAAAACGTTTGCTGCATTTTGCAAAATGTCAATTCTCCAAAAATGTG
TCCGTATATTTCTGTACCTGCAGTGTAGTAAAGGTTTAGATGAAACCCCATAATTATAGT
GGCATACTGTCACTTAGGTTTCAAGCAGCAAAATAAACAGTGCAGCTCAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCACAGAAAAATAACAAAAAACTTAAAGCACTCTATGAACAGTCACTTCACATCAAG
TCTGCCATCCCTCATCCACTGATCATGGGAGTCATCAGAGAATGTGGTGGTAAAATGCAC
TTGAGAGAAGGTGAATTTGAAAAGGCACACACTGATTTTTTTGAAGCCTTCAAGAATTAT
GATGAATCAGGAAGTCCAAGACGAACCACTTGCTTAAAATACTTGGTTTTAGCAAATATG
CTAATGAAATCGGGAATAAACCCATTTGATTCACAGGAGGCCAAACCTTACAAAAATGAT
CCAGAAATTCTAGCAATGACGAATTTAGTAAGTGCCTATCAGAATAATGACATCACTGAA
TTTGAAAAGATTCTTAAAACCAATCATAGCAACATCATGGATGATCCTTTCATAAGGGAA
CACATTGAAGAGCTTTTGAGAAACATCAGAACACAAGTGCTTATAAAATTAATTAAGCCT
TACACAAGAATACATATTCCTTTTATTTCTAAGGAGTTAAACATAGATGTAGCTGATGTG
GAGAGCTTGCTGGTACAGTGCATATTGGATAACACTATTCATGGCCGAATTGATCAAGTC
AACCAACTCCTTGAATTGGATCATCAGAAGAGGGGTGGTGCCCGATATACTGCACTAGAT
AAATGGACCAACCAACTAAATTCTCTCAACCAGGCTGTAGTCAGTAAACTGGCTTAACAG
AGAACAAGCTTTTACATACGTACTTAAGGCAACAGTGCAGAGATGTAATCCTTAAAAGAA
CTGGGAATGGCAAAACTACTGTCGGTTGATGTGTCCTGAAAATTATTGGAGTTATGGCAG
AAGTGCTTTTTTTGATCAACTGGTTTGTGTTTTGCTGCTGCATTTATCCCAAGAAAAACA
GCTTTAATCTCCAGAAGAAAACCAAAATGCCATGGGATTTATGCTCTATCTTGCCCTAAA
ACATACAACATCATAGTAATTTGTCATGGGCAACATGACCAGAGAGAAGATTTTTGTCAT
GATTTTAAATACACTGACATGCTACTGTTGGTTAAATTTAAACATGTTTTACCTGCAGAA
ATTCTCTCACAAATAACCTGCAATAACTTGAAATGCATACCCTTTTGAACACTTCCTTTT
CTCATGTATAAATTAAAACGTTTGCTGCATTTTGCAAAATGTCAATTCTCCAAAAATGTG
TCCGTATATTTCTGTACCTGCAGTGTAGTAAAGGTTTAGATGAAACCCCATAATTATAGT
GGCATACTGTCACTTAGGTTTCAAGCAGCAAAATAAACAGTGCAGCTCAGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8HXD9_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8HXD9_MACFA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               870-1099, - strand, RNAz p=0.983149
               

               
               1196-1313, - strand, RNAz p=0.585806

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               870-1099, - strand, RNAz p=0.983149
               

               
               1196-1313, - strand, RNAz p=0.585806

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1313, gnl|bosTau2|chr11 (64390286-64388965)
               

               
               1-1313, gnl|Hg17|chr15 (47213928-47206839)
               

               
               1-1313, gnl|Mm7|chr2 (125581276-125572457)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1313, gnl|bosTau2|chr11 (64390286-64388965)
               

               
               1-1313, gnl|Hg17|chr15 (47213928-47206839)
               

               
               1-1313, gnl|Mm7|chr2 (125581276-125572457)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               bfe (0.599431)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.599431)
               

               
               cbe (0.478469)
               

               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               mgm (0.360685)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	870-1099, - strand, RNAz p=0.983149
	1196-1313, - strand, RNAz p=0.585806

	1-1313, gnl\|bosTau2\|chr11 (64390286-64388965)
	1-1313, gnl\|Hg17\|chr15 (47213928-47206839)
	1-1313, gnl\|Mm7\|chr2 (125581276-125572457)

	bfe (0.599431)
	cbe (0.478469)
	mgp (0.461361)
	ski (0.440205)
	mgm (0.360685)
	rec (0.346141)
	mcp (0.341297)
	liv (0.292569)
	lin (0.291206)
	lyg (0.266205)
	kid (0.259471)
	ret (0.257467)
	sug (0.254582)
	ece (0.229305)
	spc (0.226732)
	mas (0.210305)
	cty (0.20816)
	fcc (0.197785)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	fat (0.147427)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	ssp (0.13552)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	med (0.116252)