Ss1.1-rmgm036_g7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGGCGCCGGGGCCAGGCCCGCGCCGCGCTGGCAGAAGGCGCTGGCAGAGCCGCTG AGCGCGGCGCAGCTTCGGCGGCTGGAGGAGCACCGCTACAGCGCAGCGGGCGTCTCGCTG CTCGAGCCGCCGCTGCAGCTCTACTGGACCTGGCTGCTCCAGTGGATTCCGCTGTGGATG GCCCCCAACTCCATCACCCTCCTGGGCCTCGCCATCAACCTGCTCACCACGCTTCTGCTC ATCTCCTATTGCCCGACGGTCACCGAGGAGGCACCATATTGGACGTACCTTTTATGTGCA TTGGGTCTCTTCATCTACCAATCACTGGATGCTATTGATGGGAAACAAGCCAGAAGAACA AACTCTTGTTCTCCTTTAGGGGAACTTTTTGACCATGGTTGTGACTCTCTTTCCACAGTT TTTATGGCAGTTGGAGCTTCAATTGCCGTTCGCTTAGGAACTCATCCTGACTGGTTGTTT TTCTGCTCTTTTATTGGGATGTTCATGTTTTATTGTGCTCATTGGCAGACTTATGTTTCA GGCGTGTTGAGGTTTGGAAGAGTGGATGTAACTGAAATTCAGATAGCTTTAGTGATCATC TTTGTACTCTCTACATTTGGAGGAGCAGCAATGTGGGACTATACGATACCCATCCTAGAA ATAAAACTGAAGATCTTACCAGTTCTTGGAGTAGTAGGTGGAGCAATATTTTCCTGTTCG AATTATTTCCATGTTATCCTCCATGGCGGTGTGGGCAAGAATGGATCCACAATAGCAGGC ACCAGTGTCTTGTCGCCTGGACTCCACATAGGAATAATTATTATACTGGCAATAATGATC TATAAAAAGTCAGCAACTAATTTGTTTGAAAAGCATCCTTGTCTTTATACTCTAATGTTC GGATGTGTCTTTGCTAAAGTCTCACAAAAATTGGTGATAGCACACATGACCAAAAGTGAA CTGTATCTTCAAGACAGTGTCTTTTTGGGCCCAGGTCTTTTATTTTTAGACCAGTACTTT AATAATTTTGTAGACGAATATATTGTTCTGTGGATAGCAATGGTCATTTCTTCACTTGAT ATGATAAGGTACTTTAGTGCTTTATGCCTGCAAATTTCAAGACATCTTCATCTAAGTATC TTCAAGACTTCATGTCATCAAGCACCTGAACAGGTTCAAGTTCTTCCTTCAAAGAGTCAT CAGAATAACATGGATTGAAGAGACTTTCGAACACTTGCCATCTCTTGCTGCTGCTGTTAC ATGAAAGGAGATATTAAACATTTGTTTAATTTTTAGATAAGTGTTATACATATTTCAGCA AATAAAATATTTCACTGCTTAAAAAAAAAAAAAAAAGAGATATTAAACATTTGTTTAATT TTTAGATAAGTGTTATACATATTTCAGCAAATAAAATATTTCACTGCTTAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGGCGCCGGGGCCAGGCCCGCGCCGCGCTGGCAGAAGGCGCTGGCAGAGCCGCTG AGCGCGGCGCAGCTTCGGCGGCTGGAGGAGCACCGCTACAGCGCAGCGGGCGTCTCGCTG CTCGAGCCGCCGCTGCAGCTCTACTGGACCTGGCTGCTCCAGTGGATTCCGCTGTGGATG GCCCCCAACTCCATCACCCTCCTGGGCCTCGCCATCAACCTGCTCACCACGCTTCTGCTC ATCTCCTATTGCCCGACGGTCACCGAGGAGGCACCATATTGGACGTACCTTTTATGTGCA TTGGGTCTCTTCATCTACCAATCACTGGATGCTATTGATGGGAAACAAGCCAGAAGAACA AACTCTTGTTCTCCTTTAGGGGAACTTTTTGACCATGGTTGTGACTCTCTTTCCACAGTT TTTATGGCAGTTGGAGCTTCAATTGCCGTTCGCTTAGGAACTCATCCTGACTGGTTGTTT TTCTGCTCTTTTATTGGGATGTTCATGTTTTATTGTGCTCATTGGCAGACTTATGTTTCA GGCGTGTTGAGGTTTGGAAGAGTGGATGTAACTGAAATTCAGATAGCTTTAGTGATCATC TTTGTACTCTCTACATTTGGAGGAGCAGCAATGTGGGACTATACGATACCCATCCTAGAA ATAAAACTGAAGATCTTACCAGTTCTTGGAGTAGTAGGTGGAGCAATATTTTCCTGTTCG AATTATTTCCATGTTATCCTCCATGGCGGTGTGGGCAAGAATGGATCCACAATAGCAGGC ACCAGTGTCTTGTCGCCTGGACTCCACATAGGAATAATTATTATACTGGCAATAATGATC TATAAAAAGTCAGCAACTAATTTGTTTGAAAAGCATCCTTGTCTTTATACTCTAATGTTC GGATGTGTCTTTGCTAAAGTCTCACAAAAATTGGTGATAGCACACATGACCAAAAGTGAA CTGTATCTTCAAGACAGTGTCTTTTTGGGCCCAGGTCTTTTATTTTTAGACCAGTACTTT AATAATTTTGTAGACGAATATATTGTTCTGTGGATAGCAATGGTCATTTCTTCACTTGAT ATGATAAGGTACTTTAGTGCTTTATGCCTGCAAATTTCAAGACATCTTCATCTAAGTATC TTCAAGACTTCATGTCATCAAGCACCTGAACAGGTTCAAGTTCTTCCTTCAAAGAGTCAT CAGAATAACATGGATTGAAGAGACTTTCGAACACTTGCCATCTCTTGCTGCTGCTGTTAC ATGAAAGGAGATATTAAACATTTGTTTAATTTTTAGATAAGTGTTATACATATTTCAGCA AATAAAATATTTCACTGCTTAAAAAAAAAAAAAAAAGAGATATTAAACATTTGTTTAATT TTTAGATAAGTGTTATACATATTTCAGCAAATAAAATATTTCACTGCTTAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-271, gnl|bosTau2|chr5 (39926694-39926424) | |
| 1-271, gnl|Hg17|chr12 (100594111-100594381) | |
| 1-271, gnl|Mm7|chr10 (88062134-88061864) | |
| 416-600, gnl|bosTau2|chr5 (39914043-39913859) | |
| 416-600, gnl|Hg17|chr12 (100610747-100610931) | |
| 416-600, gnl|Mm7|chr10 (88046394-88046210) | |
| 778-939, gnl|bosTau2|chr5 (39904491-39904330) | |
| 778-939, gnl|canFam2|chr15 (43636059-43636249) | |
| 778-939, gnl|danRer3|chr4 (19105341-19105172) | |
| 778-939, gnl|dasNov1|scaffold_8262 (9919-10111) | |
| 778-939, gnl|echTel1|scaffold_230027 (8744-8555) | |
| 778-939, gnl|fr1|chrUn (212021894-212022060) | |
| 778-939, gnl|hg17|chr12 (100619390-100619582) | |
| 778-939, gnl|Hg17|chr12 (100619414-100619575) | |
| 778-939, gnl|loxAfr1|scaffold_1180 (74500-74308) | |
| 778-939, gnl|mm7|chr10 (88035053-88034862) | |
| 778-939, gnl|Mm7|chr10 (88035028-88034867) | |
| 778-939, gnl|monDom2|scaffold_34 (11639724-11639520) | |
| 778-939, gnl|oryCun1|scaffold_203776 (245172-245364) | |
| 778-939, gnl|panTro1|chr10 (103080498-103080690) | |
| 778-939, gnl|rheMac2|chr11 (102916382-102916574) | |
| 778-939, gnl|rn3|chr7 (25196677-25196486) | |
| 778-939, gnl|tetNig1|chr19 (1613494-1613676) | |
| 778-939, gnl|xenTro1|scaffold_230 (280268-280061) | |
| 1172-1341, gnl|bosTau2|chr5 (39898311-39898141) | |
| 1172-1341, gnl|Hg17|chr12 (100625145-100625314) | |
| 1172-1341, gnl|Mm7|chr10 (88030846-88030679) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-271, gnl|bosTau2|chr5 (39926694-39926424) | |
| 1-271, gnl|Hg17|chr12 (100594111-100594381) | |
| 1-271, gnl|Mm7|chr10 (88062134-88061864) | |
| 416-600, gnl|bosTau2|chr5 (39914043-39913859) | |
| 416-600, gnl|Hg17|chr12 (100610747-100610931) | |
| 416-600, gnl|Mm7|chr10 (88046394-88046210) | |
| 778-939, gnl|bosTau2|chr5 (39904491-39904330) | |
| 778-939, gnl|canFam2|chr15 (43636059-43636249) | |
| 778-939, gnl|danRer3|chr4 (19105341-19105172) | |
| 778-939, gnl|dasNov1|scaffold_8262 (9919-10111) | |
| 778-939, gnl|echTel1|scaffold_230027 (8744-8555) | |
| 778-939, gnl|fr1|chrUn (212021894-212022060) | |
| 778-939, gnl|hg17|chr12 (100619390-100619582) | |
| 778-939, gnl|Hg17|chr12 (100619414-100619575) | |
| 778-939, gnl|loxAfr1|scaffold_1180 (74500-74308) | |
| 778-939, gnl|mm7|chr10 (88035053-88034862) | |
| 778-939, gnl|Mm7|chr10 (88035028-88034867) | |
| 778-939, gnl|monDom2|scaffold_34 (11639724-11639520) | |
| 778-939, gnl|oryCun1|scaffold_203776 (245172-245364) | |
| 778-939, gnl|panTro1|chr10 (103080498-103080690) | |
| 778-939, gnl|rheMac2|chr11 (102916382-102916574) | |
| 778-939, gnl|rn3|chr7 (25196677-25196486) | |
| 778-939, gnl|tetNig1|chr19 (1613494-1613676) | |
| 778-939, gnl|xenTro1|scaffold_230 (280268-280061) | |
| 1172-1341, gnl|bosTau2|chr5 (39898311-39898141) | |
| 1172-1341, gnl|Hg17|chr12 (100625145-100625314) | |
| 1172-1341, gnl|Mm7|chr10 (88030846-88030679) |
| Expressed library(ies): 44 entry(ies) | More info |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
| fat (1.6217) | |
| lun (1.20391) | |
| gul (1.06553) | |
| kid (0.908147) | |
| ret (0.901133) | |
| aor (0.781097) | |
| mga (0.64082) | |
| sag (0.548145) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ste (0.405625) | |
| lyg (0.399308) | |
| ldo (0.38801) | |
| sug (0.381874) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| ssp (0.271039) | |
| pan (0.23596) | |
| nms (0.213858) | |
| hea (0.204499) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 44 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (1.6217) | |
| lun (1.20391) | |
| gul (1.06553) | |
| kid (0.908147) | |
| ret (0.901133) | |
| aor (0.781097) | |
| mga (0.64082) | |
| sag (0.548145) | |
| tra (0.492368) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ste (0.405625) | |
| lyg (0.399308) | |
| ldo (0.38801) | |
| sug (0.381874) | |
| sme (0.305437) | |
| ski (0.29347) | |
| cte (0.29274) | |
| liv (0.292569) | |
| ssp (0.271039) | |
| pan (0.23596) | |
| nms (0.213858) | |
| hea (0.204499) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| fco (0.157208) | |
| cli (0.152812) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| med (0.116252) | |
| spc (0.113366) | |
| jej (0.0989218) |