Non-Coding RNA Search

Ss1.1-rmgm037_c16.5

Sequence:


               
               NTCGGCACCAGC------------------------------------------------
------------TGTCTTTTCTTAGCAAAAAAATTTTAACACTTGAGCCTTGGATCTTTC
ACCCTGGTGACTGTCAAGTCCAAGGCCACGTTAGGCACCAGAGTAAAAGCCTTGGGTATT
CTTCCATTCAGTGGCCTTCCTCTAGATTGTCTGATTTCTGAATGTAAATCTTTTTTTAAA
AAAATAGCAGTTTGTAGTATTTTAAAGAAAGAAAAAATCACATCCTAAATATGACTGAGC
TTGATTTTTGTGTTGATACAGATCTGCATAATCATGGCAATTTATTTTTCTGAGCATGCT
ATATAAACTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               NTCGGCACCAGC------------------------------------------------
------------TGTCTTTTCTTAGCAAAAAAATTTTAACACTTGAGCCTTGGATCTTTC
ACCCTGGTGACTGTCAAGTCCAAGGCCACGTTAGGCACCAGAGTAAAAGCCTTGGGTATT
CTTCCATTCAGTGGCCTTCCTCTAGATTGTCTGATTTCTGAATGTAAATCTTTTTTTAAA
AAAATAGCAGTTTGTAGTATTTTAAAGAAAGAAAAAATCACATCCTAAATATGACTGAGC
TTGATTTTTGTGTTGATACAGATCTGCATAATCATGGCAATTTATTTTTCTGAGCATGCT
ATATAAACTTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               73-238, - strand, RNAz p=0.981729

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-238, - strand, RNAz p=0.981729

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               57-312, gnl|bosTau2|chr5 (33700350-33700606)
               

               
               57-312, gnl|canFam2|chr11 (53253752-53254247)
               

               
               57-312, gnl|dasNov1|scaffold_5113 (64451-63894)
               

               
               57-312, gnl|echTel1|scaffold_307731 (15000-15536)
               

               
               57-312, gnl|hg17|chr9 (33102329-33102853)
               

               
               57-312, gnl|Hg17|chr9 (33102895-33102602)
               

               
               57-312, gnl|loxAfr1|scaffold_6350 (84089-84601)
               

               
               57-312, gnl|mm7|chr4 (40944550-40945067)
               

               
               57-312, gnl|Mm7|chr4 (40945110-40944807)
               

               
               57-312, gnl|monDom2|scaffold_83 (5657600-5657110)
               

               
               57-312, gnl|oryCun1|scaffold_209829 (42038-42557)
               

               
               57-312, gnl|panTro1|chr11 (33599794-33600319)
               

               
               57-312, gnl|rheMac2|chr15 (44119946-44119417)
               

               
               57-312, gnl|rn3|chr5 (58196334-58196846)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-312, gnl|bosTau2|chr5 (33700350-33700606)
               

               
               57-312, gnl|canFam2|chr11 (53253752-53254247)
               

               
               57-312, gnl|dasNov1|scaffold_5113 (64451-63894)
               

               
               57-312, gnl|echTel1|scaffold_307731 (15000-15536)
               

               
               57-312, gnl|hg17|chr9 (33102329-33102853)
               

               
               57-312, gnl|Hg17|chr9 (33102895-33102602)
               

               
               57-312, gnl|loxAfr1|scaffold_6350 (84089-84601)
               

               
               57-312, gnl|mm7|chr4 (40944550-40945067)
               

               
               57-312, gnl|Mm7|chr4 (40945110-40944807)
               

               
               57-312, gnl|monDom2|scaffold_83 (5657600-5657110)
               

               
               57-312, gnl|oryCun1|scaffold_209829 (42038-42557)
               

               
               57-312, gnl|panTro1|chr11 (33599794-33600319)
               

               
               57-312, gnl|rheMac2|chr15 (44119946-44119417)
               

               
               57-312, gnl|rn3|chr5 (58196334-58196846)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mgm (0.180343)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.180343)

	57-312, gnl\|bosTau2\|chr5 (33700350-33700606)
	57-312, gnl\|canFam2\|chr11 (53253752-53254247)
	57-312, gnl\|dasNov1\|scaffold_5113 (64451-63894)
	57-312, gnl\|echTel1\|scaffold_307731 (15000-15536)
	57-312, gnl\|hg17\|chr9 (33102329-33102853)
	57-312, gnl\|Hg17\|chr9 (33102895-33102602)
	57-312, gnl\|loxAfr1\|scaffold_6350 (84089-84601)
	57-312, gnl\|mm7\|chr4 (40944550-40945067)
	57-312, gnl\|Mm7\|chr4 (40945110-40944807)
	57-312, gnl\|monDom2\|scaffold_83 (5657600-5657110)
	57-312, gnl\|oryCun1\|scaffold_209829 (42038-42557)
	57-312, gnl\|panTro1\|chr11 (33599794-33600319)
	57-312, gnl\|rheMac2\|chr15 (44119946-44119417)
	57-312, gnl\|rn3\|chr5 (58196334-58196846)