Non-Coding RNA Search

Ss1.1-rmgm037_o5.5

Sequence:


               
               AATAAATCCAGCTAATCCCCCTCCATGGGGGATTAGGCCAGCAAACTATGGCATTAGCAT
GGGACTGATTAGCTAAATTCATCATCTTTTACCACAGGATGAATAATAGTATCCTCTCTT
AGTCCTCAGATGCAGATCTCTTGGTTAGGCCAGCCAAAATTGGAAGACTTAAATCGCAAG
GACAGAACAGGAATGAACTACATGAAAGTGCGAACTGGAGTAAGACATGCTGTTCGGGGC
CTAATGGAGGAAGATGCAGAGCCCATCTTTGAAGATGTGATGATGTCATCCCGGAGCCAG
TTAGAAGACATGAATGAAGAATTTGAAGACACCATGGTTATTGACCTGCCCCCATCAAGA
AATCGGCGAGAGAGAGCTGAGCTGAGGCCAGATTTCTTTGATTCTGCAGCTATCATAGAA
GACGATTCAGGATTTGGAATGCCTATGTTCTGAAGTCTGAAGAAAATTTACAAATCTGGA
ACTCTATTATTTAGAGCTAGAGGCCTATATACTGTGATAGCTTGTATGGGGGAAAAAAAC
ACTTTTGATGTGATCTGATTTTTTAATCAAATGATTGAGGTCAATCCCTTTTTGCAGTGA
CAGAAGAGGAGCATGTAAATTACGCAAGGGAATGTTGGTGAATGTCACCTCAGAAAGACT
GACCTGAAAAATCATTTGTGTCCCATTATTGGACTTATCCCAATACAGATGTGTGTGTTT
TTCTGGAGGGAGGAAGAAATTTTAAATTTTTAAAACAGCTGACAAGATAAACACTGTTAT
ACACCTGTTTTATGAAAACTCAGCATTGAGTAAAAAAAAAAATATTTTTAACTTTATTTT
CCTGTTGTACAATTTAAAAACCGTTTTAACATTTTGCCTTTTTATGTTTTAAAAGCTAAC
CATTTTTATTAAACCTATGAGTAAGCAGCTCATCCTAATTGCCGAAGAGTGTTTTGGAGC
TCACTGGATTTGGTTGACCTTGTGGAATATAGAAACATGGAGGAGCAGAATATTGACAAG
CTAAGATGAAATTCCGACAGTGCATCTCTGCCAAAAACCACACACCCTCTGTGGATATGG
ATATGAATTCCCAGATTTTATATACTCTTGAATAAAAAGGTTTATTTTTATTTATAAGGG
GGCATAAAATAAGAAATGTCCATGCAGCCATTTTTTCCAACAGATGCTGTACACACCATT
CATTTTATATAGAATAGGGAGACTCAAATACAGTACATTTTCTATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAATCCAGCTAATCCCCCTCCATGGGGGATTAGGCCAGCAAACTATGGCATTAGCAT
GGGACTGATTAGCTAAATTCATCATCTTTTACCACAGGATGAATAATAGTATCCTCTCTT
AGTCCTCAGATGCAGATCTCTTGGTTAGGCCAGCCAAAATTGGAAGACTTAAATCGCAAG
GACAGAACAGGAATGAACTACATGAAAGTGCGAACTGGAGTAAGACATGCTGTTCGGGGC
CTAATGGAGGAAGATGCAGAGCCCATCTTTGAAGATGTGATGATGTCATCCCGGAGCCAG
TTAGAAGACATGAATGAAGAATTTGAAGACACCATGGTTATTGACCTGCCCCCATCAAGA
AATCGGCGAGAGAGAGCTGAGCTGAGGCCAGATTTCTTTGATTCTGCAGCTATCATAGAA
GACGATTCAGGATTTGGAATGCCTATGTTCTGAAGTCTGAAGAAAATTTACAAATCTGGA
ACTCTATTATTTAGAGCTAGAGGCCTATATACTGTGATAGCTTGTATGGGGGAAAAAAAC
ACTTTTGATGTGATCTGATTTTTTAATCAAATGATTGAGGTCAATCCCTTTTTGCAGTGA
CAGAAGAGGAGCATGTAAATTACGCAAGGGAATGTTGGTGAATGTCACCTCAGAAAGACT
GACCTGAAAAATCATTTGTGTCCCATTATTGGACTTATCCCAATACAGATGTGTGTGTTT
TTCTGGAGGGAGGAAGAAATTTTAAATTTTTAAAACAGCTGACAAGATAAACACTGTTAT
ACACCTGTTTTATGAAAACTCAGCATTGAGTAAAAAAAAAAATATTTTTAACTTTATTTT
CCTGTTGTACAATTTAAAAACCGTTTTAACATTTTGCCTTTTTATGTTTTAAAAGCTAAC
CATTTTTATTAAACCTATGAGTAAGCAGCTCATCCTAATTGCCGAAGAGTGTTTTGGAGC
TCACTGGATTTGGTTGACCTTGTGGAATATAGAAACATGGAGGAGCAGAATATTGACAAG
CTAAGATGAAATTCCGACAGTGCATCTCTGCCAAAAACCACACACCCTCTGTGGATATGG
ATATGAATTCCCAGATTTTATATACTCTTGAATAAAAAGGTTTATTTTTATTTATAAGGG
GGCATAAAATAAGAAATGTCCATGCAGCCATTTTTTCCAACAGATGCTGTACACACCATT
CATTTTATATAGAATAGGGAGACTCAAATACAGTACATTTTCTATTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26352017|dbj|BAC39645.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26352017|dbj|BAC39645.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               549-664, - strand, RNAz p=0.808296
               

               
               705-822, + strand, RNAz p=0.702495
               

               
               1099-1218, - strand, RNAz p=0.517934

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               549-664, - strand, RNAz p=0.808296
               

               
               705-822, + strand, RNAz p=0.702495
               

               
               1099-1218, - strand, RNAz p=0.517934

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of AL831978, -
               

               
               5' of CR749247, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL831978, -
               

               
               5' of CR749247, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-233, gnl|bosTau2|chr1 (85755998-85756232)
               

               
               1-233, gnl|Hg17|chr3 (137543215-137542981)
               

               
               1-233, gnl|Mm7|chr9 (100596364-100596590)
               


               
               430-1248, gnl|bosTau2|chr1 (85758904-85759723)
               

               
               430-1248, gnl|Hg17|chr3 (137539817-137539002)
               

               
               430-1248, gnl|Mm7|chr9 (100599529-100600336)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-233, gnl|bosTau2|chr1 (85755998-85756232)
               

               
               1-233, gnl|Hg17|chr3 (137543215-137542981)
               

               
               1-233, gnl|Mm7|chr9 (100596364-100596590)
               


               
               430-1248, gnl|bosTau2|chr1 (85758904-85759723)
               

               
               430-1248, gnl|Hg17|chr3 (137539817-137539002)
               

               
               430-1248, gnl|Mm7|chr9 (100599529-100600336)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ldo (0.0970026)

	549-664, - strand, RNAz p=0.808296
	705-822, + strand, RNAz p=0.702495
	1099-1218, - strand, RNAz p=0.517934

	1-233, gnl\|bosTau2\|chr1 (85755998-85756232)
	1-233, gnl\|Hg17\|chr3 (137543215-137542981)
	1-233, gnl\|Mm7\|chr9 (100596364-100596590)

	430-1248, gnl\|bosTau2\|chr1 (85758904-85759723)
	430-1248, gnl\|Hg17\|chr3 (137539817-137539002)
	430-1248, gnl\|Mm7\|chr9 (100599529-100600336)

	pla (0.267344)
	mgp (0.230681)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	tra (0.123092)
	eru (0.120048)
	ldo (0.0970026)