Non-Coding RNA Search

Ss1.1-rmgm038_c5.5

Sequence:


               
               TTTAGAGTGTTGCCATTTTGCACCTCAAATGAATTAACGGATTTAGGCAGCAGTCATCAA
AGATTTTATATTAACGTTACGGAGAAACAGCTAGATATTATGTACAGTATGATGGAAGTA
CATAACACCACATGAAGTGGTCTTGCTTAGTGGTGATGATGATGAGAAGAAGAAAAAGAA
GAAGAGGACCAGGATCTGGCCAAGCCTCTAGATCACCGATTTATCGGAAATACAGAGCAC
AGAGGAACAAGCATTTATAATACAACTGTGGAAATGTGAACACTGGCTGAAAGACTCATA
ATACTGAAGAATTACTGTTCTTTTGTTTTCTGTGTGTGATAGTGGTAGAGTGGTTATGTT
TTACGTGCTTATCTTTTGGAGATACATACTGAAATATTTAAGTATAAAACAATATGATGT
CTGGGATTTATTTCAGCATGATCTAAGTGTGAGAGGACAGTGACGATAAAGCGAGATGGG
ATCTATAATGACAATTACTGCAGCTGGGTAACGAGTATATCTGAGTTCATTGTATTTGTC
TCTCTGCTTTTGTATATGCTTGACTATTTCAAAATAAAAATTGAAACAAGGTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAGAGTGTTGCCATTTTGCACCTCAAATGAATTAACGGATTTAGGCAGCAGTCATCAA
AGATTTTATATTAACGTTACGGAGAAACAGCTAGATATTATGTACAGTATGATGGAAGTA
CATAACACCACATGAAGTGGTCTTGCTTAGTGGTGATGATGATGAGAAGAAGAAAAAGAA
GAAGAGGACCAGGATCTGGCCAAGCCTCTAGATCACCGATTTATCGGAAATACAGAGCAC
AGAGGAACAAGCATTTATAATACAACTGTGGAAATGTGAACACTGGCTGAAAGACTCATA
ATACTGAAGAATTACTGTTCTTTTGTTTTCTGTGTGTGATAGTGGTAGAGTGGTTATGTT
TTACGTGCTTATCTTTTGGAGATACATACTGAAATATTTAAGTATAAAACAATATGATGT
CTGGGATTTATTTCAGCATGATCTAAGTGTGAGAGGACAGTGACGATAAAGCGAGATGGG
ATCTATAATGACAATTACTGCAGCTGGGTAACGAGTATATCTGAGTTCATTGTATTTGTC
TCTCTGCTTTTGTATATGCTTGACTATTTCAAAATAAAAATTGAAACAAGGTTTTTTTTT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               137-595, gnl|bosTau2|chr19 (2642529-2642974)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-595, gnl|bosTau2|chr19 (2642529-2642974)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               gul (0.355177)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ret (0.128733)

	gul (0.355177)
	vin (0.332557)
	lin (0.291206)
	cbe (0.239234)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	fco (0.157208)
	hyp (0.142837)
	ret (0.128733)