Non-Coding RNA Search

Ss1.1-rmgm22_e18.5

Sequence:


               
               ATCCAACACAGAAATCTCTATGGCAGGGCTGCTTAAGTCCATCACCTGATGTATAATCTC
ATAGGAAATACTTTGATACTTACCTTATATGGAACAAACATGAGTTTATAATAATCTTTT
TTCCTCCAAGCCAATAAAAAACTGGCTTATTAAGAATGAGGCAAGAAATACTATACTATA
TATATATATATAAAATGAAGAACTTCCTACCTATAGTTGACATGTGAGGCTACATGAATA
AATATTTGGAAAACAAAAGTTACCAAAATTTAATCTACAATGGACAGAAACTCCCAACAG
ATCGTTTCTTAAAAGATGGTCACACATTCACTGGTGGATGGCCTGAGGAGCCAATTCCTT
TGAGCTACTGGAAAGGTTTGCAATTATATGACAAAGGTAGCTTTACCCTAGCTCCAGCAT
CCATTAAAACTCCCCAAGACAAAACTGGGCACTATGTAAGTTTAAAACATACATATAAAA
ATTCCTAGCAACACACAGCTTATTTTATACTAATCTTATTCTTCACCTATTCTTTTCCTC
TGATATAAAGCGAAGATGGTACAGCTCAATTTCTTTAGCATTATTACATAACACAATTGA
ATTTCTTTATTCTTACCCCCCATCCAAAATACAGAGCCCAGGTTATTTTCTGTGCAAATA
ATTTATAACCTAGAGAATTGAAAAGATCACAGAATCCTTAGTCAAATTAATTAATGTCTC
AAGCATTCCAGAATTTTCTTGGGTAATTGATTTGCCCTTTTACTGTCCATTTGTGAATTT
CTGTTTCAAGATGTATAATGTACAAGAACTGCAAGGTAAAATATGTATAGATTATAAAGG
TGTTTGTTTTTTTTTTTATACCTCATGTAAGTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAACACAGAAATCTCTATGGCAGGGCTGCTTAAGTCCATCACCTGATGTATAATCTC
ATAGGAAATACTTTGATACTTACCTTATATGGAACAAACATGAGTTTATAATAATCTTTT
TTCCTCCAAGCCAATAAAAAACTGGCTTATTAAGAATGAGGCAAGAAATACTATACTATA
TATATATATATAAAATGAAGAACTTCCTACCTATAGTTGACATGTGAGGCTACATGAATA
AATATTTGGAAAACAAAAGTTACCAAAATTTAATCTACAATGGACAGAAACTCCCAACAG
ATCGTTTCTTAAAAGATGGTCACACATTCACTGGTGGATGGCCTGAGGAGCCAATTCCTT
TGAGCTACTGGAAAGGTTTGCAATTATATGACAAAGGTAGCTTTACCCTAGCTCCAGCAT
CCATTAAAACTCCCCAAGACAAAACTGGGCACTATGTAAGTTTAAAACATACATATAAAA
ATTCCTAGCAACACACAGCTTATTTTATACTAATCTTATTCTTCACCTATTCTTTTCCTC
TGATATAAAGCGAAGATGGTACAGCTCAATTTCTTTAGCATTATTACATAACACAATTGA
ATTTCTTTATTCTTACCCCCCATCCAAAATACAGAGCCCAGGTTATTTTCTGTGCAAATA
ATTTATAACCTAGAGAATTGAAAAGATCACAGAATCCTTAGTCAAATTAATTAATGTCTC
AAGCATTCCAGAATTTTCTTGGGTAATTGATTTGCCCTTTTACTGTCCATTTGTGAATTT
CTGTTTCAAGATGTATAATGTACAAGAACTGCAAGGTAAAATATGTATAGATTATAAAGG
TGTTTGTTTTTTTTTTTATACCTCATGTAAGTTTTC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               127-495, gnl|bosTau2|chr25 (9861083-9860699)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-495, gnl|bosTau2|chr25 (9861083-9860699)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fco (0.943248)
               

               
               mgm (0.360685)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.943248)
               

               
               mgm (0.360685)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               pan (0.23596)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	fco (0.943248)
	mgm (0.360685)
	thg (0.253582)
	tra (0.246184)
	pan (0.23596)
	fty (0.17584)
	lnt (0.142308)
	lyg (0.133103)
	ova (0.129132)
	ret (0.128733)