Non-Coding RNA Search

Ss1.1-rmgm23_c20.5

Sequence:


               
               AAAATTTTTTTTTATTTTGCTTTTTACCTTTCCAAGCGTTTTTTTTTTCCCTGCTAAATT
ATTTTTCTCATCTCCATGCTTTTATTATTATTTTTAAAAATAGTTATTTCTCCAATACAA
TTTTCTTTCTACTGCACAGCATGGTGACCCACTTACACATATATGTACACATTCTATTTT
CGCACGTTATCAGGCTCCGTCATAATCCAAGCGTTATTATTACACCTTATTCTCTCAAGA
ATTCTCTGTAGTAGGTGGGCAGGTATAATATTTTCACTTTCCGGGTGGGAATGCACAAAG
TACCTTTGCTCCTGTACCACACTTGGGAGATAATCCCAATTACATGGATTATTTGCAGTG
GGGGTAATTAGATTACATGCATGATTTTTTCTCTTCTGGTTTTCAGCTTGCAGGCAGCAG
AGGGCGCGTGAACACACAAAAGACACAAAATTGATGATAGATTTAGGATTGTCCATTAAA
GTTTCAACAGTGTGAATTTCACTAAAATAGGACCTTGTACTTAATCTTTTTCCTATTTTA
GGAGTCTGATCTCATTTTAAATGTTCTGTTCTCCTTTCTCGGTAATGAGGGTTTCGACCT
CACGTAAATCACCGTGACACATATAAATCCAAGAGCCTTCCAATTTGGCTTCAAAATTCT
TTCAGATAATAAAAGTATTAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTTTTTTTTATTTTGCTTTTTACCTTTCCAAGCGTTTTTTTTTTCCCTGCTAAATT
ATTTTTCTCATCTCCATGCTTTTATTATTATTTTTAAAAATAGTTATTTCTCCAATACAA
TTTTCTTTCTACTGCACAGCATGGTGACCCACTTACACATATATGTACACATTCTATTTT
CGCACGTTATCAGGCTCCGTCATAATCCAAGCGTTATTATTACACCTTATTCTCTCAAGA
ATTCTCTGTAGTAGGTGGGCAGGTATAATATTTTCACTTTCCGGGTGGGAATGCACAAAG
TACCTTTGCTCCTGTACCACACTTGGGAGATAATCCCAATTACATGGATTATTTGCAGTG
GGGGTAATTAGATTACATGCATGATTTTTTCTCTTCTGGTTTTCAGCTTGCAGGCAGCAG
AGGGCGCGTGAACACACAAAAGACACAAAATTGATGATAGATTTAGGATTGTCCATTAAA
GTTTCAACAGTGTGAATTTCACTAAAATAGGACCTTGTACTTAATCTTTTTCCTATTTTA
GGAGTCTGATCTCATTTTAAATGTTCTGTTCTCCTTTCTCGGTAATGAGGGTTTCGACCT
CACGTAAATCACCGTGACACATATAAATCCAAGAGCCTTCCAATTTGGCTTCAAAATTCT
TTCAGATAATAAAAGTATTAAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               217-372, + strand, RNAz p=0.995916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               217-372, + strand, RNAz p=0.995916

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               217-570, gnl|bosTau2|chr18 (13735665-13736038)
               

               
               217-570, gnl|Hg17|chr16 (86360725-86360335)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-570, gnl|bosTau2|chr18 (13735665-13736038)
               

               
               217-570, gnl|Hg17|chr16 (86360725-86360335)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               pro (0.512033)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               pty (0.142714)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               thg (0.380373)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               mgp (0.230681)
               

               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               pty (0.142714)

	217-570, gnl\|bosTau2\|chr18 (13735665-13736038)
	217-570, gnl\|Hg17\|chr16 (86360725-86360335)

	pro (0.512033)
	thg (0.380373)
	mgm (0.360685)
	fty (0.351679)
	mgp (0.230681)
	ill (0.175593)
	mga (0.160205)
	pty (0.142714)