Ss1.1-rmgm32_n22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATATTCTTTGGTGGTGGATTTCCTTCAGGTAGTGTCCATTCATTTTCAAATGGACGAGCT GGTTATAGCCATCAACATCAGCATCGACATAGTGGACATGAAAGAGAAGAAGAAAGAGGA GATGGAGGTTTTTCTGTATTTATCCAGCTGATGCCCATTATTGTATTGATCCTCGTGTCA TTATTAAGCCAGCTGATGGTCTCTAATCCTCCTTATTCCTTATATCCCAGATCTGGATCA GGGCAAACGATTAAAATGCAGACAGAAAACTTGGGTGTCGTTTATTATGTCAACAAGGAC TTTAAAAATGAATATAAAGGAATGTTACTACAAAAAGTAGAAAAGAGTGTGGAAGAAGAT TATGTGACTAATATTCGAAATAATTGCTGGAAAGAAAGACAACAAAAAACAGATATGCAG TACGCAGCAAAAGTGTACCGTGATGAACGACTCCGAAGGAAGGCAGATGCCTTGAGCATG GACAACTGTAAAGAACTGGAGCGGCTGACCAGTATTTATAAAGGAGGATGAACTGGAATT TTATTTATACCTTTTAGAATACTCTTTATTTTTCCTGTAAGTAAGTTTAGTTTCATCATG AGAGCTAAAGAAAAAGATTTGATGTTGAAAACTAAACTGAATAGTTGGTCCCTGAAATCT TGGACTGTTTATGACCTACTGGCTCCTTTAAATAATAAGAAACTGAAAACTAAAATTCAT ATTTTAGTTATGCTTCTGCAGTTATTTTCACTTTAAAAGCTTATATGATTCCTAACTAAA AATGTCTTGAGAAAGGATTATCACACCTGTAGCAGTTTCTGGTTTTCGATTCTCCATTTT TTTTCCCTTGTCATATTTGTAAATACTTATGGAATGATCATTTTGTATATATTCAGGTTA TTGCTTTTTTATTTAAATTCTTTTGGTGTTTAGCTCCATGAAACACTCAAGTTTAAATTG ATGGAATAAATGTTCTATGACAGAATTACAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATATTCTTTGGTGGTGGATTTCCTTCAGGTAGTGTCCATTCATTTTCAAATGGACGAGCT GGTTATAGCCATCAACATCAGCATCGACATAGTGGACATGAAAGAGAAGAAGAAAGAGGA GATGGAGGTTTTTCTGTATTTATCCAGCTGATGCCCATTATTGTATTGATCCTCGTGTCA TTATTAAGCCAGCTGATGGTCTCTAATCCTCCTTATTCCTTATATCCCAGATCTGGATCA GGGCAAACGATTAAAATGCAGACAGAAAACTTGGGTGTCGTTTATTATGTCAACAAGGAC TTTAAAAATGAATATAAAGGAATGTTACTACAAAAAGTAGAAAAGAGTGTGGAAGAAGAT TATGTGACTAATATTCGAAATAATTGCTGGAAAGAAAGACAACAAAAAACAGATATGCAG TACGCAGCAAAAGTGTACCGTGATGAACGACTCCGAAGGAAGGCAGATGCCTTGAGCATG GACAACTGTAAAGAACTGGAGCGGCTGACCAGTATTTATAAAGGAGGATGAACTGGAATT TTATTTATACCTTTTAGAATACTCTTTATTTTTCCTGTAAGTAAGTTTAGTTTCATCATG AGAGCTAAAGAAAAAGATTTGATGTTGAAAACTAAACTGAATAGTTGGTCCCTGAAATCT TGGACTGTTTATGACCTACTGGCTCCTTTAAATAATAAGAAACTGAAAACTAAAATTCAT ATTTTAGTTATGCTTCTGCAGTTATTTTCACTTTAAAAGCTTATATGATTCCTAACTAAA AATGTCTTGAGAAAGGATTATCACACCTGTAGCAGTTTCTGGTTTTCGATTCTCCATTTT TTTTCCCTTGTCATATTTGTAAATACTTATGGAATGATCATTTTGTATATATTCAGGTTA TTGCTTTTTTATTTAAATTCTTTTGGTGTTTAGCTCCATGAAACACTCAAGTTTAAATTG ATGGAATAAATGTTCTATGACAGAATTACAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 124-233, gnl|bosTau2|chr6 (9396363-9396472) | |
| 124-233, gnl|canFam2|chr32 (24774357-24774475) | |
| 124-233, gnl|danRer3|chr1 (26422679-26422797) | |
| 124-233, gnl|dasNov1|scaffold_40824 (9050-9168) | |
| 124-233, gnl|echTel1|scaffold_309047 (39976-39858) | |
| 124-233, gnl|fr1|chrUn (238411740-238411859) | |
| 124-233, gnl|galGal2|chrUn (145740288-145740170) | |
| 124-233, gnl|hg17|chr4 (101183926-101184044) | |
| 124-233, gnl|Hg17|chr4 (101184041-101183932) | |
| 124-233, gnl|loxAfr1|scaffold_48012 (8500-8382) | |
| 124-233, gnl|mm7|chr3 (137713101-137712983) | |
| 124-233, gnl|Mm7|chr3 (137712984-137713093) | |
| 124-233, gnl|monDom2|scaffold_37 (12819127-12819009) | |
| 124-233, gnl|oryCun1|scaffold_81604 (1261-1379) | |
| 124-233, gnl|panTro1|chr3 (117561763-117561881) | |
| 124-233, gnl|rheMac2|chr5 (92862820-92862938) | |
| 124-233, gnl|rn3|chr2 (235382922-235382804) | |
| 124-233, gnl|tetNig1|chr18 (6159376-6159494) | |
| 124-233, gnl|xenTro1|scaffold_326 (1215313-1215431) | |
| 234-406, gnl|bosTau2|chr6 (9397445-9397617) | |
| 234-406, gnl|Hg17|chr4 (101182233-101182061) | |
| 234-406, gnl|Mm7|chr3 (137714124-137714296) | |
| 407-990, gnl|bosTau2|chr6 (9402794-9403367) | |
| 407-990, gnl|canFam2|chr32 (24768236-24768643) | |
| 407-990, gnl|danRer3|chr1 (26416470-26416885) | |
| 407-990, gnl|dasNov1|scaffold_40824 (4596-4991) | |
| 407-990, gnl|echTel1|scaffold_309047 (43274-42868) | |
| 407-990, gnl|galGal2|chrUn (13693115-13692737) | |
| 407-990, gnl|hg17|chr4 (101178858-101179264) | |
| 407-990, gnl|Hg17|chr4 (101179487-101178910) | |
| 407-990, gnl|loxAfr1|scaffold_48012 (16417-16009) | |
| 407-990, gnl|mm7|chr3 (137717172-137716795) | |
| 407-990, gnl|Mm7|chr3 (137716584-137717120) | |
| 407-990, gnl|monDom2|scaffold_37 (12824898-12824476) | |
| 407-990, gnl|panTro1|chr3 (117556688-117557094) | |
| 407-990, gnl|rheMac2|chr5 (92857886-92858291) | |
| 407-990, gnl|rn3|chr2 (235386380-235386002) | |
| 407-990, gnl|xenTro1|scaffold_326 (1213743-1214091) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-233, gnl|bosTau2|chr6 (9396363-9396472) | |
| 124-233, gnl|canFam2|chr32 (24774357-24774475) | |
| 124-233, gnl|danRer3|chr1 (26422679-26422797) | |
| 124-233, gnl|dasNov1|scaffold_40824 (9050-9168) | |
| 124-233, gnl|echTel1|scaffold_309047 (39976-39858) | |
| 124-233, gnl|fr1|chrUn (238411740-238411859) | |
| 124-233, gnl|galGal2|chrUn (145740288-145740170) | |
| 124-233, gnl|hg17|chr4 (101183926-101184044) | |
| 124-233, gnl|Hg17|chr4 (101184041-101183932) | |
| 124-233, gnl|loxAfr1|scaffold_48012 (8500-8382) | |
| 124-233, gnl|mm7|chr3 (137713101-137712983) | |
| 124-233, gnl|Mm7|chr3 (137712984-137713093) | |
| 124-233, gnl|monDom2|scaffold_37 (12819127-12819009) | |
| 124-233, gnl|oryCun1|scaffold_81604 (1261-1379) | |
| 124-233, gnl|panTro1|chr3 (117561763-117561881) | |
| 124-233, gnl|rheMac2|chr5 (92862820-92862938) | |
| 124-233, gnl|rn3|chr2 (235382922-235382804) | |
| 124-233, gnl|tetNig1|chr18 (6159376-6159494) | |
| 124-233, gnl|xenTro1|scaffold_326 (1215313-1215431) | |
| 234-406, gnl|bosTau2|chr6 (9397445-9397617) | |
| 234-406, gnl|Hg17|chr4 (101182233-101182061) | |
| 234-406, gnl|Mm7|chr3 (137714124-137714296) | |
| 407-990, gnl|bosTau2|chr6 (9402794-9403367) | |
| 407-990, gnl|canFam2|chr32 (24768236-24768643) | |
| 407-990, gnl|danRer3|chr1 (26416470-26416885) | |
| 407-990, gnl|dasNov1|scaffold_40824 (4596-4991) | |
| 407-990, gnl|echTel1|scaffold_309047 (43274-42868) | |
| 407-990, gnl|galGal2|chrUn (13693115-13692737) | |
| 407-990, gnl|hg17|chr4 (101178858-101179264) | |
| 407-990, gnl|Hg17|chr4 (101179487-101178910) | |
| 407-990, gnl|loxAfr1|scaffold_48012 (16417-16009) | |
| 407-990, gnl|mm7|chr3 (137717172-137716795) | |
| 407-990, gnl|Mm7|chr3 (137716584-137717120) | |
| 407-990, gnl|monDom2|scaffold_37 (12824898-12824476) | |
| 407-990, gnl|panTro1|chr3 (117556688-117557094) | |
| 407-990, gnl|rheMac2|chr5 (92857886-92858291) | |
| 407-990, gnl|rn3|chr2 (235386380-235386002) | |
| 407-990, gnl|xenTro1|scaffold_326 (1213743-1214091) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fty (0.351679) | |
| lnt (0.284616) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgm (0.180343) | |
| ski (0.146735) | |
| bla (0.124347) | |
| pgl (0.118483) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.351679) | |
| lnt (0.284616) | |
| ret (0.257467) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mgm (0.180343) | |
| ski (0.146735) | |
| bla (0.124347) | |
| pgl (0.118483) |