Non-Coding RNA Search

Ss1.1-rmgp001_e18.5

Sequence:


               
               CATTTTCTTCCCCAAGTATTCAACTCCATAAAATTCCCTATTTAACCTGCGTAATGATAA
CTGAAACAGCTGTCAGTGAACCATAATGTGAAATTTTACCAGCTGTGTGGTGATTAGTTC
AAATCTGTCTTTAAAAGTTAGCATCAAGCATCTTCACACATTTAAACTTGATGCTTAGGG
CTATTTTGCAAAACCGAAGGAAAAAAAAAAAACAGCTGTGATCCTGTACTTTTTTCTGTA
CCTTGAGCTAAAAGTTCAAATCTAGCAAAAGCATTGATGCTTTAGGGCCAGTGGTTTCAG
GTAGGAGTGTTACATTCCTGGGATATGCAGATGATCAGTCCATTGGGAAAATGTTAAAAT
GCTTATTTGTATTTAATCTCATCCTTTTAAATTTCT------------------------
------------------------------------------------ACATTCATTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTTCTTCCCCAAGTATTCAACTCCATAAAATTCCCTATTTAACCTGCGTAATGATAA
CTGAAACAGCTGTCAGTGAACCATAATGTGAAATTTTACCAGCTGTGTGGTGATTAGTTC
AAATCTGTCTTTAAAAGTTAGCATCAAGCATCTTCACACATTTAAACTTGATGCTTAGGG
CTATTTTGCAAAACCGAAGGAAAAAAAAAAAACAGCTGTGATCCTGTACTTTTTTCTGTA
CCTTGAGCTAAAAGTTCAAATCTAGCAAAAGCATTGATGCTTTAGGGCCAGTGGTTTCAG
GTAGGAGTGTTACATTCCTGGGATATGCAGATGATCAGTCCATTGGGAAAATGTTAAAAT
GCTTATTTGTATTTAATCTCATCCTTTTAAATTTCT------------------------
------------------------------------------------ACATTCATTGGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-397, gnl|bosTau2|chr25 (25856591-25856221)
               

               
               3-397, gnl|Hg17|chr6 (108296113-108295738)
               

               
               3-397, gnl|Mm7|chr10 (42642404-42642766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-397, gnl|bosTau2|chr25 (25856591-25856221)
               

               
               3-397, gnl|Hg17|chr6 (108296113-108295738)
               

               
               3-397, gnl|Mm7|chr10 (42642404-42642766)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               isp (0.150376)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               isp (0.150376)
               

               
               ecc (0.115035)

	3-397, gnl\|bosTau2\|chr25 (25856591-25856221)
	3-397, gnl\|Hg17\|chr6 (108296113-108295738)
	3-397, gnl\|Mm7\|chr10 (42642404-42642766)