Non-Coding RNA Search

Ss1.1-rmgp001_n12.5

Sequence:


               
               GGGCTAAATCATGATTCTAAAATCTATTGGAGAATTCACAGAAACTTACTGAAAGCTGAA
TTAACAGCCTTAAAAAAAGGAGAAGGAATATGGAAGGAAGAATCTGAAAAAGAAAGTTAT
TTGGAAAGATTCAAAGGCTCCTGGAGAGAAATATGGAAAAAAGACAATTATTTAAAAAAA
GTTGGATCAGATTTCAACTTGAAAAAAGAAAGTTATTATGACAAATTTAGAAGGACTTAT
GAAGCATGGAAAGAGAATGTGAATAACTACTCCTTGTTACTGAAGTTCAGAGAACTTATG
AGTCGCGTACACTTTCGGAGAAAAGGGTGAAATATCTCAAAGAGTCCGGAGGTGACCTAC
TCCAAAAAGAATGAAATATGTAAATATAATGAATAATTTTCATTGAGATGAAATGGAAAT
TTCCCTGGATGATCAAACTTGCATTCTAATGATATTTAAATATTTAAGAGATGATTCTTA
TAAATGTAACATCAGAATAACTTAAACAAATGGTGATGAATGTAATGTGCTTTTAGCAAA
AACAAAACACTAAAAAGTTATCAGTAAAAAAAAAGTTATCAGGTTATCCTTCAACACATG
TAATGATAATACACATGTACACATGTAGTTATAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTAAATCATGATTCTAAAATCTATTGGAGAATTCACAGAAACTTACTGAAAGCTGAA
TTAACAGCCTTAAAAAAAGGAGAAGGAATATGGAAGGAAGAATCTGAAAAAGAAAGTTAT
TTGGAAAGATTCAAAGGCTCCTGGAGAGAAATATGGAAAAAAGACAATTATTTAAAAAAA
GTTGGATCAGATTTCAACTTGAAAAAAGAAAGTTATTATGACAAATTTAGAAGGACTTAT
GAAGCATGGAAAGAGAATGTGAATAACTACTCCTTGTTACTGAAGTTCAGAGAACTTATG
AGTCGCGTACACTTTCGGAGAAAAGGGTGAAATATCTCAAAGAGTCCGGAGGTGACCTAC
TCCAAAAAGAATGAAATATGTAAATATAATGAATAATTTTCATTGAGATGAAATGGAAAT
TTCCCTGGATGATCAAACTTGCATTCTAATGATATTTAAATATTTAAGAGATGATTCTTA
TAAATGTAACATCAGAATAACTTAAACAAATGGTGATGAATGTAATGTGCTTTTAGCAAA
AACAAAACACTAAAAAGTTATCAGTAAAAAAAAAGTTATCAGGTTATCCTTCAACACATG
TAATGATAATACACATGTACACATGTAGTTATAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, + strand, RNAz p=0.929606

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.929606

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC064898, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC064898, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-560, gnl|bosTau2|chr1 (71577460-71578024)
               

               
               1-560, gnl|Hg17|chr3 (156964337-156963775)
               

               
               1-560, gnl|Mm7|chr3 (64061438-64060720)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr1 (71577460-71578024)
               

               
               1-560, gnl|Hg17|chr3 (156964337-156963775)
               

               
               1-560, gnl|Mm7|chr3 (64061438-64060720)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-560, gnl\|bosTau2\|chr1 (71577460-71578024)
	1-560, gnl\|Hg17\|chr3 (156964337-156963775)
	1-560, gnl\|Mm7\|chr3 (64061438-64060720)

	mgp (0.230681)
	mas (0.210305)
	tes (0.207814)
	aor (0.195274)
	fhi (0.169578)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	ova (0.129132)
	sug (0.127291)
	ecc (0.115035)