Non-Coding RNA Search

Ss1.1-rmgp002_c20.5

Sequence:


               
               TTCTTTCTCGACATTATGTTCATCTAGAGCGATCCCCTTGGAAAGGACTTCCAGAACTGA
CCAACGAGAATGGACAATACTGTCCTTTCAGCTGTGAAACACAAGCCTGGTCAATTGCCA
CTATTCTTGAAACACTCCATGACTTATAGTTGACTCATTAAATGTGCAGTCAATTGTGTT
GTTGAATGCAAGGTCATACTATAATGTAAATGCTTCATATGCACATGCGCAAGTCATTTT
AACATCTCATTCATATAATGACGCCCACTGTAAAGCACTGGTTTTTCTTTTTCATTCTCT
CTCTTTTTTTTAATGTACAGAGTAGCTTTTGATTTGAGTAAGAAAAAAATCATCGCTACC
AATGGAATGTTTTTCTTTTGAGGTCAGGAAGTAGTCTGCAAATGCCTAGAAGTAAATAAA
TTGAAATCCAGAGTTTTAAAAAGAAAAGTCATGTAATCTTATATTTGTACATAAATGACA
ATGAAATGTGAGAATGTAATAATGAAAGAAATGGAAAAGTATCTTTAAATTGTGGTCTAT
GTTTTCCTCAGTAACAATACATACGAAATAGGCTGTGTAATTAATGTTCTCACCTTTACT
GTAGTGTTTCCAGCACCTTCCACACTGTGTTCAATAAATACTAAATTAATGTTGAATCAT
GGAAGTGTCTACCTACAATATATGTTCATAAATGGAGCACAGATATCTATAATGTGCTTT
TATTTTTTTCACTGATATGTTAAAATGTTTTTAATATAATGAATTTCAACAGTATTTTTA
TCATAGTTCACTTCTGCTAATGATGCATAGGATATATGAAAAAAACCACAAAGCATTAGG
AATTTATTTTCTAGAAACAGTTTTGTAAAATGAGTCTTGAGTTCCAGTTTCCTACTATGA
TATGGTTTACATTTTCAAAATGCAAATTGTTGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTCTCGACATTATGTTCATCTAGAGCGATCCCCTTGGAAAGGACTTCCAGAACTGA
CCAACGAGAATGGACAATACTGTCCTTTCAGCTGTGAAACACAAGCCTGGTCAATTGCCA
CTATTCTTGAAACACTCCATGACTTATAGTTGACTCATTAAATGTGCAGTCAATTGTGTT
GTTGAATGCAAGGTCATACTATAATGTAAATGCTTCATATGCACATGCGCAAGTCATTTT
AACATCTCATTCATATAATGACGCCCACTGTAAAGCACTGGTTTTTCTTTTTCATTCTCT
CTCTTTTTTTTAATGTACAGAGTAGCTTTTGATTTGAGTAAGAAAAAAATCATCGCTACC
AATGGAATGTTTTTCTTTTGAGGTCAGGAAGTAGTCTGCAAATGCCTAGAAGTAAATAAA
TTGAAATCCAGAGTTTTAAAAAGAAAAGTCATGTAATCTTATATTTGTACATAAATGACA
ATGAAATGTGAGAATGTAATAATGAAAGAAATGGAAAAGTATCTTTAAATTGTGGTCTAT
GTTTTCCTCAGTAACAATACATACGAAATAGGCTGTGTAATTAATGTTCTCACCTTTACT
GTAGTGTTTCCAGCACCTTCCACACTGTGTTCAATAAATACTAAATTAATGTTGAATCAT
GGAAGTGTCTACCTACAATATATGTTCATAAATGGAGCACAGATATCTATAATGTGCTTT
TATTTTTTTCACTGATATGTTAAAATGTTTTTAATATAATGAATTTCAACAGTATTTTTA
TCATAGTTCACTTCTGCTAATGATGCATAGGATATATGAAAAAAACCACAAAGCATTAGG
AATTTATTTTCTAGAAACAGTTTTGTAAAATGAGTCTTGAGTTCCAGTTTCCTACTATGA
TATGGTTTACATTTTCAAAATGCAAATTGTTGGGCA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               31-597, gnl|bosTau2|chr3 (35356047-35355481)
               

               
               31-597, gnl|Hg17|chr1 (100099110-100099638)
               


               
               602-926, gnl|bosTau2|chr3 (35355182-35354859)
               

               
               602-926, gnl|Hg17|chr1 (100099657-100099955)
               

               
               602-926, gnl|Mm7|chr3 (116517405-116517107)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-597, gnl|bosTau2|chr3 (35356047-35355481)
               

               
               31-597, gnl|Hg17|chr1 (100099110-100099638)
               


               
               602-926, gnl|bosTau2|chr3 (35355182-35354859)
               

               
               602-926, gnl|Hg17|chr1 (100099657-100099955)
               

               
               602-926, gnl|Mm7|chr3 (116517405-116517107)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               lin (0.145603)

	31-597, gnl\|bosTau2\|chr3 (35356047-35355481)
	31-597, gnl\|Hg17\|chr1 (100099110-100099638)

	602-926, gnl\|bosTau2\|chr3 (35355182-35354859)
	602-926, gnl\|Hg17\|chr1 (100099657-100099955)
	602-926, gnl\|Mm7\|chr3 (116517405-116517107)