Non-Coding RNA Search

Ss1.1-rmgp004_i16.5

Sequence:


               
               GTCCTTTATATAATGGTGGAAATGTTATCTTGGAATATCTTAATGATGAAGAACAGTTTT
TAAAAAATGTGGATTCTTACTTGGAATAGTCTTTGAAGATTCAAACCAGGAATCACAAGG
AAAATTCAATGTTAATTTCTTTTATTGCAAGTATTATAAATTTTTTTATTTTTGAATTTT
TGGGGGGAGTTCTCTTATGGTGCAGTGGATTAAGGATCTGGCATTGTCACTGCAGTGGCC
TAGGTTGCTACTCTGTGGTACAGGTTCATTCGCTGGCCTGGGAACTTCCACATGTTGTAG
GTGCAGCCAAAAAAAAAGAAAAAGAGAAAGTTACTTTTTATTTCCATTATGTCATAATTT
AATTATCAGTTTTCTATTAAGTTGAATTTGAATTTTTGTGTTTTCAAGTTTAACTATGAA
CTGACATTCAATTATTAGCAAATTCTTGTATCTAATTCACTTTTATTAGGTTGTGCTGTA
GTAACAATAACAAAGATGTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTTTATATAATGGTGGAAATGTTATCTTGGAATATCTTAATGATGAAGAACAGTTTT
TAAAAAATGTGGATTCTTACTTGGAATAGTCTTTGAAGATTCAAACCAGGAATCACAAGG
AAAATTCAATGTTAATTTCTTTTATTGCAAGTATTATAAATTTTTTTATTTTTGAATTTT
TGGGGGGAGTTCTCTTATGGTGCAGTGGATTAAGGATCTGGCATTGTCACTGCAGTGGCC
TAGGTTGCTACTCTGTGGTACAGGTTCATTCGCTGGCCTGGGAACTTCCACATGTTGTAG
GTGCAGCCAAAAAAAAAGAAAAAGAGAAAGTTACTTTTTATTTCCATTATGTCATAATTT
AATTATCAGTTTTCTATTAAGTTGAATTTGAATTTTTGTGTTTTCAAGTTTAACTATGAA
CTGACATTCAATTATTAGCAAATTCTTGTATCTAATTCACTTTTATTAGGTTGTGCTGTA
GTAACAATAACAAAGATGTATTTT

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-153, gnl|bosTau2|chr14 (49965620-49965777)
               

               
               1-153, gnl|Hg17|chr8 (82777573-82777409)
               

               
               1-153, gnl|Mm7|chr3 (10349008-10348820)
               


               
               327-503, gnl|bosTau2|chr14 (49965813-49965988)
               

               
               327-503, gnl|Hg17|chr8 (82777390-82777218)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr14 (49965620-49965777)
               

               
               1-153, gnl|Hg17|chr8 (82777573-82777409)
               

               
               1-153, gnl|Mm7|chr3 (10349008-10348820)
               


               
               327-503, gnl|bosTau2|chr14 (49965813-49965988)
               

               
               327-503, gnl|Hg17|chr8 (82777390-82777218)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mgp (0.230681)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

	1-153, gnl\|bosTau2\|chr14 (49965620-49965777)
	1-153, gnl\|Hg17\|chr8 (82777573-82777409)
	1-153, gnl\|Mm7\|chr3 (10349008-10348820)

	327-503, gnl\|bosTau2\|chr14 (49965813-49965988)
	327-503, gnl\|Hg17\|chr8 (82777390-82777218)