Non-Coding RNA Search

Ss1.1-rmgp009_f10.5

Sequence:


               
               GGTGGAACCGCCGCCAAGATGCAGATATTCGTGAAGACGCTGACGGGCAAGACCATCACT
CTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAA
GGTAATTTTTTAAAACTAATCTCAATATGGATTAATATAATCATTTTAAAACTCATCTGT
AGAGGCTCAGGCCATTAGACATAAATGCTTTTGGTGGGGTGGAAGAGGTCAGGTTGACAA
AAACGCTTTTGAACTAAGACAGTAGACAAATGTTTGGGCATGGGGCTAAGCTGCAGTACC
TTCACAAGTGTGAGTTTAGATGAACTAGTTAATTTACATCTGTTATCAGCTATAAAATGA
TCATGTTAACCCGTATTAAGATTAAATAAGATAAAATTAAACATTTACTTTAGACATTGT
CTGTAGCAAAAACCACTGATGACTATTAGTACCATTTATTTGATTCAGGATTGTAAATCT
TGAGCAGATATGCTTGATTTGCAATCACTTAATTTTATTTATTTATTTTAATCTAATTAG
GGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTA
CTTTGTCTGACTACAACATTCAAAAGGTCTGTATGGCAGAAAGAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGAACCGCCGCCAAGATGCAGATATTCGTGAAGACGCTGACGGGCAAGACCATCACT
CTCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAA
GGTAATTTTTTAAAACTAATCTCAATATGGATTAATATAATCATTTTAAAACTCATCTGT
AGAGGCTCAGGCCATTAGACATAAATGCTTTTGGTGGGGTGGAAGAGGTCAGGTTGACAA
AAACGCTTTTGAACTAAGACAGTAGACAAATGTTTGGGCATGGGGCTAAGCTGCAGTACC
TTCACAAGTGTGAGTTTAGATGAACTAGTTAATTTACATCTGTTATCAGCTATAAAATGA
TCATGTTAACCCGTATTAAGATTAAATAAGATAAAATTAAACATTTACTTTAGACATTGT
CTGTAGCAAAAACCACTGATGACTATTAGTACCATTTATTTGATTCAGGATTGTAAATCT
TGAGCAGATATGCTTGATTTGCAATCACTTAATTTTATTTATTTATTTTAATCTAATTAG
GGATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTA
CTTTGTCTGACTACAACATTCAAAAGGTCTGTATGGCAGAAAGAACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46229800|gb|EAK90618.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46229800|gb|EAK90618.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               470-643, + strand, RNAz p=0.999788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-643, + strand, RNAz p=0.999788

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-127, gnl|bosTau2|chr11 (21613161-21613285)
               

               
               2-127, gnl|Hg17|chr1 (189416953-189417077)
               

               
               2-127, gnl|Mm7|chr9 (83507889-83508013)
               


               
               308-643, gnl|bosTau2|chr11 (21977633-21977977)
               

               
               308-643, gnl|Hg17|chr2 (55372401-55373009)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-127, gnl|bosTau2|chr11 (21613161-21613285)
               

               
               2-127, gnl|Hg17|chr1 (189416953-189417077)
               

               
               2-127, gnl|Mm7|chr9 (83507889-83508013)
               


               
               308-643, gnl|bosTau2|chr11 (21977633-21977977)
               

               
               308-643, gnl|Hg17|chr2 (55372401-55373009)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               amn (0.417711)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spl (0.143184)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               spl (0.143184)
               

               
               med (0.116252)

	2-127, gnl\|bosTau2\|chr11 (21613161-21613285)
	2-127, gnl\|Hg17\|chr1 (189416953-189417077)
	2-127, gnl\|Mm7\|chr9 (83507889-83508013)

	308-643, gnl\|bosTau2\|chr11 (21977633-21977977)
	308-643, gnl\|Hg17\|chr2 (55372401-55373009)

	amn (0.417711)
	eye (0.341006)
	fce (0.271592)
	mgp (0.230681)
	spl (0.143184)
	med (0.116252)