Non-Coding RNA Search

Ss1.1-rmgp016_b16.5

Sequence:


               
               ATTTATTTTTAAAATATTTGTATCCCATTTGCAGTGATTCATTGTTTTAATTTTTTTCTA
CATGTTTTTATTTTTAAAAAGAACATACTTATCAGTTGAATAGGGATGAAGCTTTTAGAT
ATTTTCCAAAATATTTATAAAATATTTCACAAACTATTGAGAAATCACTTCCAAAATGGT
GGCTATCAAACAACTAGTTACTAGTTTTTAAAGCAGAAATCACACATTTTTTAACTCCTG
GGTGAATTTAGTTTAACTGTGACCTTTAGTTGAAAACCTCAGATATGTTTTGGAAAAGTT
GTAATTTGAGAACACCAAAGGAAGCTAATCCAGACTCTAATGAAGTTAGCTATTAAGGAC
AATGCTTTATTGACAGTATATTGCTAATACATTTCGTCATGAAATCTAGAGTTAAATAAT
TTTGTTGTGGAATAGTGTCACTGTAACTTTGCCTCATGAAGTTCAATAAACCAACTTTGG
CATAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCTTTATAAATTTTCCCGGGGG
GGGCCAAAATTTACCCGCCCCCATTTTTTTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATTTTTAAAATATTTGTATCCCATTTGCAGTGATTCATTGTTTTAATTTTTTTCTA
CATGTTTTTATTTTTAAAAAGAACATACTTATCAGTTGAATAGGGATGAAGCTTTTAGAT
ATTTTCCAAAATATTTATAAAATATTTCACAAACTATTGAGAAATCACTTCCAAAATGGT
GGCTATCAAACAACTAGTTACTAGTTTTTAAAGCAGAAATCACACATTTTTTAACTCCTG
GGTGAATTTAGTTTAACTGTGACCTTTAGTTGAAAACCTCAGATATGTTTTGGAAAAGTT
GTAATTTGAGAACACCAAAGGAAGCTAATCCAGACTCTAATGAAGTTAGCTATTAAGGAC
AATGCTTTATTGACAGTATATTGCTAATACATTTCGTCATGAAATCTAGAGTTAAATAAT
TTTGTTGTGGAATAGTGTCACTGTAACTTTGCCTCATGAAGTTCAATAAACCAACTTTGG
CATAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGCCCTTTATAAATTTTCCCGGGGG
GGGCCAAAATTTACCCGCCCCCATTTTTTTTAAAAA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               3-490, gnl|bosTau2|chr17 (12746304-12745829)
               

               
               3-490, gnl|canFam2|chr19 (6258820-6257937)
               

               
               3-490, gnl|dasNov1|scaffold_60652 (4047-3182)
               

               
               3-490, gnl|echTel1|scaffold_309772 (4937-5830)
               

               
               3-490, gnl|hg17|chr4 (140753867-140754759)
               

               
               3-490, gnl|Hg17|chr4 (140754195-140754675)
               

               
               3-490, gnl|mm7|chr3 (51619659-51620518)
               

               
               3-490, gnl|Mm7|chr3 (51619989-51620438)
               

               
               3-490, gnl|monDom2|scaffold_9 (6968164-6969094)
               

               
               3-490, gnl|oryCun1|scaffold_80695 (11668-12548)
               

               
               3-490, gnl|panTro1|chr3 (158004338-158005233)
               

               
               3-490, gnl|rheMac2|chr5 (131945612-131946519)
               

               
               3-490, gnl|rn3|chr2 (140338915-140339761)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-490, gnl|bosTau2|chr17 (12746304-12745829)
               

               
               3-490, gnl|canFam2|chr19 (6258820-6257937)
               

               
               3-490, gnl|dasNov1|scaffold_60652 (4047-3182)
               

               
               3-490, gnl|echTel1|scaffold_309772 (4937-5830)
               

               
               3-490, gnl|hg17|chr4 (140753867-140754759)
               

               
               3-490, gnl|Hg17|chr4 (140754195-140754675)
               

               
               3-490, gnl|mm7|chr3 (51619659-51620518)
               

               
               3-490, gnl|Mm7|chr3 (51619989-51620438)
               

               
               3-490, gnl|monDom2|scaffold_9 (6968164-6969094)
               

               
               3-490, gnl|oryCun1|scaffold_80695 (11668-12548)
               

               
               3-490, gnl|panTro1|chr3 (158004338-158005233)
               

               
               3-490, gnl|rheMac2|chr5 (131945612-131946519)
               

               
               3-490, gnl|rn3|chr2 (140338915-140339761)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	3-490, gnl\|bosTau2\|chr17 (12746304-12745829)
	3-490, gnl\|canFam2\|chr19 (6258820-6257937)
	3-490, gnl\|dasNov1\|scaffold_60652 (4047-3182)
	3-490, gnl\|echTel1\|scaffold_309772 (4937-5830)
	3-490, gnl\|hg17\|chr4 (140753867-140754759)
	3-490, gnl\|Hg17\|chr4 (140754195-140754675)
	3-490, gnl\|mm7\|chr3 (51619659-51620518)
	3-490, gnl\|Mm7\|chr3 (51619989-51620438)
	3-490, gnl\|monDom2\|scaffold_9 (6968164-6969094)
	3-490, gnl\|oryCun1\|scaffold_80695 (11668-12548)
	3-490, gnl\|panTro1\|chr3 (158004338-158005233)
	3-490, gnl\|rheMac2\|chr5 (131945612-131946519)
	3-490, gnl\|rn3\|chr2 (140338915-140339761)