Non-Coding RNA Search

Ss1.1-rmgp016_d8.5

Sequence:


               
               CTCACCAGCGCCAACCTCAGCTCCCAGGCCAGCTCTCTGAATGTCCAGGAATTTGAGGAC
CTCTGGCCTCACTTGTCTTTGGTCATTGATGGGGGACCAATTGGGGATGGCCAGAGCCCT
GAGTGCCGATTAGGGTCAACGGTTGTTGACTTGTCTGTGCCTGGAAAGTTTGGCATCATT
CGTCCGGGTTGCGCCCTGGAAAGTACTACAGTCATCCTCCAGAAGTATGGGCTGTTTCCC
TCACACAGATCCTGCTCGTGAAACTCCAGAAGAGGGAGGGCCCAAGGACGGGTGCTGGAC
ACTATGTGTCTGTCCGCTGGTGGCTGGCAAGGCCTTATTTACAGAGGCCGCTGGGGCTAC
AGTGTTAACGAGTCTGACCTTTTAAGGCAAAGTTTCTTTCTGAACACTGTCAGCCAGGCC
TAGAAGCTACTGGTTAAGCCTCACACATCACTGAGGAGGTTATTTATCTATAATTTCATA
TTACCAGCTAAAAGCTGAATGGAGATTTTAAGAACATTCCTAGTATGGCCTTGTTTCTTG
TTTCTTCAGATTTTTGAAAAATAAAATAACAGATTTGGAATCTAGTGAGAGCCTCTTCTC
TGGGTGGTGGCATTTAAGGTCCAAATCAGCTAAGGTAGCAGCTGGTGCTTTTTTAGAAGT
CTTTTACGTGAACCAGAGGCATGAGTTTGTGCTCCTGAAGCCGGAAGCAGGTTAGGATAA
AAATTGTAGGACTTCCCTTTGGGGCTCAGCGGTTAACGAACCCGACTAGGATCCATGAGG
ATGTGGGTTCGATCCCTGGCCTCGCTTGAGGATGTGGAGTTGGTGTGAGCTGCAGAGGAG
GTCAAAAATGCAGCTCGGATCTGGCATGGCTGTGGCTGTGGCGTGGGCCGGCGGCTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACCAGCGCCAACCTCAGCTCCCAGGCCAGCTCTCTGAATGTCCAGGAATTTGAGGAC
CTCTGGCCTCACTTGTCTTTGGTCATTGATGGGGGACCAATTGGGGATGGCCAGAGCCCT
GAGTGCCGATTAGGGTCAACGGTTGTTGACTTGTCTGTGCCTGGAAAGTTTGGCATCATT
CGTCCGGGTTGCGCCCTGGAAAGTACTACAGTCATCCTCCAGAAGTATGGGCTGTTTCCC
TCACACAGATCCTGCTCGTGAAACTCCAGAAGAGGGAGGGCCCAAGGACGGGTGCTGGAC
ACTATGTGTCTGTCCGCTGGTGGCTGGCAAGGCCTTATTTACAGAGGCCGCTGGGGCTAC
AGTGTTAACGAGTCTGACCTTTTAAGGCAAAGTTTCTTTCTGAACACTGTCAGCCAGGCC
TAGAAGCTACTGGTTAAGCCTCACACATCACTGAGGAGGTTATTTATCTATAATTTCATA
TTACCAGCTAAAAGCTGAATGGAGATTTTAAGAACATTCCTAGTATGGCCTTGTTTCTTG
TTTCTTCAGATTTTTGAAAAATAAAATAACAGATTTGGAATCTAGTGAGAGCCTCTTCTC
TGGGTGGTGGCATTTAAGGTCCAAATCAGCTAAGGTAGCAGCTGGTGCTTTTTTAGAAGT
CTTTTACGTGAACCAGAGGCATGAGTTTGTGCTCCTGAAGCCGGAAGCAGGTTAGGATAA
AAATTGTAGGACTTCCCTTTGGGGCTCAGCGGTTAACGAACCCGACTAGGATCCATGAGG
ATGTGGGTTCGATCCCTGGCCTCGCTTGAGGATGTGGAGTTGGTGTGAGCTGCAGAGGAG
GTCAAAAATGCAGCTCGGATCTGGCATGGCTGTGGCTGTGGCGTGGGCCGGCGGCTACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10440179|dbj|BAB15668.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10440179|dbj|BAB15668.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-436, - strand, RNAz p=0.993923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-436, - strand, RNAz p=0.993923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-729, gnl|bosTau2|chr17 (34988992-34989725)
               

               
               2-729, gnl|Hg17|chr1 (37941668-37938077)
               

               
               2-729, gnl|Mm7|chr4 (124296620-124299606)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-729, gnl|bosTau2|chr17 (34988992-34989725)
               

               
               2-729, gnl|Hg17|chr1 (37941668-37938077)
               

               
               2-729, gnl|Mm7|chr4 (124296620-124299606)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               jej (0.0989218)

	2-729, gnl\|bosTau2\|chr17 (34988992-34989725)
	2-729, gnl\|Hg17\|chr1 (37941668-37938077)
	2-729, gnl\|Mm7\|chr4 (124296620-124299606)

	mgp (0.230681)
	gul (0.177588)
	sin (0.174948)
	cut (0.169924)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	lyg (0.133103)
	thg (0.126791)
	jej (0.0989218)