Non-Coding RNA Search

Ss1.1-rmgp028_p16.5

Sequence:


               
               GTTTATGCCTTTGTAGTTCTTGGGCCCAGGAGCCACATTAAATGTACCTACACTACCACA
GCACACCAAAAAGTATCCCATATGGAAGCTCTCATCCTGCAAGCTGTCAGTAACATGCTT
TGAGACTTGAACAGTCATTTTGAAGTTTCTTCCAACTGAAAGAGGAGTTGAAGTGCTGAT
GGGAAGCCGAGCACTGCCCTGCAGCTGATTGCTCATTGGTAAATTTACTCCTGGACAGGA
CATATATTAAAACATTTAGCTTCCATTTCTAGAACCATGGTTAATGGCTATGCCATTAAG
CTTATACTGGAATTGTAAGCCCCAGAGGGCAGGAATTTTGTCTTTGTCACCAGCACCACA
AGGGCCTGCTACATGGTAGGTTCTCAAATATTTGTTGTCTTAGTGAATATACAACTTGTA
CAGCAGAAGCTAAGGGACAAAATGCTTTTAATTTAAAAAAAACTAAAATTCATCCTTATT
TTACAGAAAATGTGCTCTCACAGGTCAGAGTAAGTCCTGTAAACACAGAATTAAATTAGG
AGACTCAAGCAACTATTATTATATTTCTCCATTCTGCAGATACAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTATGCCTTTGTAGTTCTTGGGCCCAGGAGCCACATTAAATGTACCTACACTACCACA
GCACACCAAAAAGTATCCCATATGGAAGCTCTCATCCTGCAAGCTGTCAGTAACATGCTT
TGAGACTTGAACAGTCATTTTGAAGTTTCTTCCAACTGAAAGAGGAGTTGAAGTGCTGAT
GGGAAGCCGAGCACTGCCCTGCAGCTGATTGCTCATTGGTAAATTTACTCCTGGACAGGA
CATATATTAAAACATTTAGCTTCCATTTCTAGAACCATGGTTAATGGCTATGCCATTAAG
CTTATACTGGAATTGTAAGCCCCAGAGGGCAGGAATTTTGTCTTTGTCACCAGCACCACA
AGGGCCTGCTACATGGTAGGTTCTCAAATATTTGTTGTCTTAGTGAATATACAACTTGTA
CAGCAGAAGCTAAGGGACAAAATGCTTTTAATTTAAAAAAAACTAAAATTCATCCTTATT
TTACAGAAAATGTGCTCTCACAGGTCAGAGTAAGTCCTGTAAACACAGAATTAAATTAGG
AGACTCAAGCAACTATTATTATATTTCTCCATTCTGCAGATACAGGAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-171, gnl|bosTau2|chr5 (29218664-29218832)
               

               
               3-171, gnl|Hg17|chr12 (68492327-68492492)
               

               
               3-171, gnl|Mm7|chr10 (116418710-116418568)
               


               
               237-586, gnl|bosTau2|chr5 (29219780-29220120)
               

               
               237-586, gnl|Hg17|chr12 (68492559-68492924)
               

               
               237-586, gnl|Mm7|chr10 (116418477-116418167)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-171, gnl|bosTau2|chr5 (29218664-29218832)
               

               
               3-171, gnl|Hg17|chr12 (68492327-68492492)
               

               
               3-171, gnl|Mm7|chr10 (116418710-116418568)
               


               
               237-586, gnl|bosTau2|chr5 (29219780-29220120)
               

               
               237-586, gnl|Hg17|chr12 (68492559-68492924)
               

               
               237-586, gnl|Mm7|chr10 (116418477-116418167)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               jej (0.0989218)

	3-171, gnl\|bosTau2\|chr5 (29218664-29218832)
	3-171, gnl\|Hg17\|chr12 (68492327-68492492)
	3-171, gnl\|Mm7\|chr10 (116418710-116418568)

	237-586, gnl\|bosTau2\|chr5 (29219780-29220120)
	237-586, gnl\|Hg17\|chr12 (68492559-68492924)
	237-586, gnl\|Mm7\|chr10 (116418477-116418167)