Non-Coding RNA Search

Ss1.1-rmgp029_e10.5

Sequence:


               
               AAAATTGAGTGTCTTCACTTTCACTTTATGGGTCTCCCTTTTCCAGGTGCCACACCTCCC
TGGATGGTCCAAGATGAGGAATATAGCTCTGGAAGCCAACAAATAGGACCCTCCTATGAA
GAGTTTCTTAAAGAAAGTAAGTTAACTAATGCAGGAATGGTGGTGGCTTAAGTCTTTCTA
CTCAAAACTGTTTACTTATTGCAGAGGAAAAACAGAAGTTGAAGAAACTCCCACCAGACA
GAGTTGGGGCTAACTTTGACCACAGTTCCAGTACCGGTGCTGGCTGGCTGCCCTCTTTCG
GCCGGGTCTGGAATAACGGACGCCGCTGGCAATCCAGGTATGGTCCCAAGTGTCAGGACC
CCAACCTCTGCACCCCTTTGGAGGTCTCACTTTGCTAACCTTTCATTTCCTTTCAGGCAT
CAATTCAAAACAGAAGCCGCAGCAAGAAACAAACAGCAATGACATAAAGAAAACAAGCGG
ATGATTTCCTGATACATTTGAGCCACAATAAGGCTCAAAGCCAAGTCAACAATCTCATAC
CTACTACTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTGAGTGTCTTCACTTTCACTTTATGGGTCTCCCTTTTCCAGGTGCCACACCTCCC
TGGATGGTCCAAGATGAGGAATATAGCTCTGGAAGCCAACAAATAGGACCCTCCTATGAA
GAGTTTCTTAAAGAAAGTAAGTTAACTAATGCAGGAATGGTGGTGGCTTAAGTCTTTCTA
CTCAAAACTGTTTACTTATTGCAGAGGAAAAACAGAAGTTGAAGAAACTCCCACCAGACA
GAGTTGGGGCTAACTTTGACCACAGTTCCAGTACCGGTGCTGGCTGGCTGCCCTCTTTCG
GCCGGGTCTGGAATAACGGACGCCGCTGGCAATCCAGGTATGGTCCCAAGTGTCAGGACC
CCAACCTCTGCACCCCTTTGGAGGTCTCACTTTGCTAACCTTTCATTTCCTTTCAGGCAT
CAATTCAAAACAGAAGCCGCAGCAAGAAACAAACAGCAATGACATAAAGAAAACAAGCGG
ATGATTTCCTGATACATTTGAGCCACAATAAGGCTCAAAGCCAAGTCAACAATCTCATAC
CTACTACTGTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57085921|ref|XP_536550.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57085921|ref|XP_536550.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               8-159, - strand, RNAz p=0.729642

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-159, - strand, RNAz p=0.729642

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-552, gnl|bosTau2|chr15 (14199625-14200187)
               

               
               8-552, gnl|Hg17|chr11 (118390902-118391585)
               

               
               8-552, gnl|Mm7|chr9 (44345151-44344587)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-552, gnl|bosTau2|chr15 (14199625-14200187)
               

               
               8-552, gnl|Hg17|chr11 (118390902-118391585)
               

               
               8-552, gnl|Mm7|chr9 (44345151-44344587)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mgp (0.230681)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               ova (0.129132)

	8-552, gnl\|bosTau2\|chr15 (14199625-14200187)
	8-552, gnl\|Hg17\|chr11 (118390902-118391585)
	8-552, gnl\|Mm7\|chr9 (44345151-44344587)