Non-Coding RNA Search

Ss1.1-rmgp029_k3.5

Sequence:


               
               TTTGTTTTTCCCAAATGCTTAACCAGTCGTCTCAAAGGAAATGGTTTAGTGTTGAGGTAT
TTCATACCAGCCAGAAAGAGGCATAAATTTATATCCTTTGGAGAGATTAGATATAAGTGA
AATTATCTCTAATTTGATAAATCATTCTTATTTGTATGAGGAAACTATTTTCCTTTTTTC
AATTCAGTCAAGTATATCGTCATCTGTTTTAATTTAATAGAGTACTTGAATAATTTATTT
TCCTTAAGGTGTTTTTATTTGTATTGAAATAGCGTTTCTCATTCCTAAATAATATAGATT
AACAATCTAGAGATCATCTTTAATATATGTCATTATCTAAAGTTACTATTTTCATCAACT
TCTAAATTAAATTTTTTTTTTTGCTTCTTAAATTTTCAAACTTCAATTCTTCTCTCTGTG
GAATTTTAAATATTAGTCTTCAAAGGTAAAAAAAAATCTGTTTTTGGAATAGAGGTCCTG
ATTTTAAAGTAAGTATCTTCATCTGTTTTCATTACATAATGATTAAGTATGGAATACTGC
ATTTCTTGATAACTTGTTCAAATATATGCACTAATTTTAGTCATAATTTAAAATCATAAA
AATAAGAGGTTAGGATACTATGCATTTGTGTTTTATTACTTGTAAAAATTTAACTTTTTC
TATTCATAATAAATGCTCGGTTTAAAGCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTTCCCAAATGCTTAACCAGTCGTCTCAAAGGAAATGGTTTAGTGTTGAGGTAT
TTCATACCAGCCAGAAAGAGGCATAAATTTATATCCTTTGGAGAGATTAGATATAAGTGA
AATTATCTCTAATTTGATAAATCATTCTTATTTGTATGAGGAAACTATTTTCCTTTTTTC
AATTCAGTCAAGTATATCGTCATCTGTTTTAATTTAATAGAGTACTTGAATAATTTATTT
TCCTTAAGGTGTTTTTATTTGTATTGAAATAGCGTTTCTCATTCCTAAATAATATAGATT
AACAATCTAGAGATCATCTTTAATATATGTCATTATCTAAAGTTACTATTTTCATCAACT
TCTAAATTAAATTTTTTTTTTTGCTTCTTAAATTTTCAAACTTCAATTCTTCTCTCTGTG
GAATTTTAAATATTAGTCTTCAAAGGTAAAAAAAAATCTGTTTTTGGAATAGAGGTCCTG
ATTTTAAAGTAAGTATCTTCATCTGTTTTCATTACATAATGATTAAGTATGGAATACTGC
ATTTCTTGATAACTTGTTCAAATATATGCACTAATTTTAGTCATAATTTAAAATCATAAA
AATAAGAGGTTAGGATACTATGCATTTGTGTTTTATTACTTGTAAAAATTTAACTTTTTC
TATTCATAATAAATGCTCGGTTTAAAGCAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-117, - strand, RNAz p=0.916828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.916828

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-686, gnl|bosTau2|chrX (38751707-38751004)
               

               
               1-686, gnl|Hg17|chrX (21668317-21668936)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-686, gnl|bosTau2|chrX (38751707-38751004)
               

               
               1-686, gnl|Hg17|chrX (21668317-21668936)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mgp (0.230681)
               

               
               fco (0.157208)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               fco (0.157208)

	1-686, gnl\|bosTau2\|chrX (38751707-38751004)
	1-686, gnl\|Hg17\|chrX (21668317-21668936)