Non-Coding RNA Search

Ss1.1-rmgp029_l2.5

Sequence:


               
               CCACAGTGTGACGTTCTGGCGTATGAGAAGTTTTTCCTCCTGCTGGCCGAGTTCAACTCT
GCCATGAACCCCATCATCTACTCCTACCGCGACAAGGAGATGAGCGCCACCTTCAGGCAG
ATCCTCTGCTGCCAGCGCAGTGAGAACACCAGTGGCCCCACCGAAGGCTCAGACCGCTCA
GCTTCCTCCCTCAACCACACCATCTTGGCTGGAGTTCACAGCAATGACCACTCGGTGGTT
TAGAAAGGAAACTAAGATGAGACGCAGCCATCATCTATTGAGGGATGAGCAGCCTCCGCT
ACCCCAAGGCCAGGGCAAGGTGGGGGATATGAGAGAGAGAGAGCGAGAGAGGAAAAATAC
ACTCATGTACTTAATAAACACTAACCCATGGCAGTATTTCTTCGTAGACCCAACAAGACT
TGATACATATTGAAAATTAGCTTCTGTGACAACCTTCATCCTGATCCCCATTCCTTTTGA
AAGTAGAAAGTGGCGATTTCACGATGGAATTCATAAACAGACTCTGGAGTGTCCATTTAC
ACTACACTAACTAGTCTTCAAAAGATTTTGTGTGGTTTGGTGCAAGTCGGAATAAATTCT
GGCTAATGGAATCCACAACGTCATTTACATACAGGCTTCCCTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACAGTGTGACGTTCTGGCGTATGAGAAGTTTTTCCTCCTGCTGGCCGAGTTCAACTCT
GCCATGAACCCCATCATCTACTCCTACCGCGACAAGGAGATGAGCGCCACCTTCAGGCAG
ATCCTCTGCTGCCAGCGCAGTGAGAACACCAGTGGCCCCACCGAAGGCTCAGACCGCTCA
GCTTCCTCCCTCAACCACACCATCTTGGCTGGAGTTCACAGCAATGACCACTCGGTGGTT
TAGAAAGGAAACTAAGATGAGACGCAGCCATCATCTATTGAGGGATGAGCAGCCTCCGCT
ACCCCAAGGCCAGGGCAAGGTGGGGGATATGAGAGAGAGAGAGCGAGAGAGGAAAAATAC
ACTCATGTACTTAATAAACACTAACCCATGGCAGTATTTCTTCGTAGACCCAACAAGACT
TGATACATATTGAAAATTAGCTTCTGTGACAACCTTCATCCTGATCCCCATTCCTTTTGA
AAGTAGAAAGTGGCGATTTCACGATGGAATTCATAAACAGACTCTGGAGTGTCCATTTAC
ACTACACTAACTAGTCTTCAAAAGATTTTGTGTGGTTTGGTGCAAGTCGGAATAAATTCT
GGCTAATGGAATCCACAACGTCATTTACATACAGGCTTCCCTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-358, - strand, RNAz p=0.99804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-358, - strand, RNAz p=0.99804

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-646, gnl|bosTau2|chr8 (54390319-54389687)
               

               
               1-646, gnl|Hg17|chr9 (110717498-110716866)
               

               
               1-646, gnl|Mm7|chr4 (58478964-58478374)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-646, gnl|bosTau2|chr8 (54390319-54389687)
               

               
               1-646, gnl|Hg17|chr9 (110717498-110716866)
               

               
               1-646, gnl|Mm7|chr4 (58478964-58478374)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               mgp (0.461361)
               

               
               fce (0.271592)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               fce (0.271592)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-646, gnl\|bosTau2\|chr8 (54390319-54389687)
	1-646, gnl\|Hg17\|chr9 (110717498-110716866)
	1-646, gnl\|Mm7\|chr4 (58478964-58478374)

	mgp (0.461361)
	fce (0.271592)
	gul (0.177588)
	cut (0.169924)
	cje (0.165235)
	fat (0.147427)
	spc (0.113366)
	cty (0.10408)