Non-Coding RNA Search

Ss1.1-rmgp029_m10.5

Sequence:


               
               GTGCGCGCCTCTTCGGATCGCACAGGTTGCAGCGAGTATATTAAGGACGATATAGCGACA
GAGCTACCTTGTCACCATTTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAGAAGTCA
GGGACATGCCCTGTGTGCCGCCGTCATTTTCCACCTGCTGTGATTGAAACACCTGCAGCT
GCTTCCTCTGAGCCTGATCATGATGCCCCACCTTCAAATGACAGTACTGCAGAAGCCCCC
TAAACCCTAACACTTGAATGAGATCAGTCTATCAGAGTAAATCTGCCAATTCCTTCTAAA
TCTGATGTGCAAATAATTATATATAAATATATTAAAAATGCTATATATAGTCTATGCCAT
AGTTTAGAAAGAATATTAACCTTTCTAAACTAAATTTAGGTTTGCAGAAAGTACTAAACA
TTTTCAAGCTGAATGTTGAGCAGTGCATCCATTTTCTTTAGTTTAATATGTTATTAATTG
TAAAGTCAAGCTTATCAACTAACTTTCTCCAGAAGAAATAATCCTCTATGTGGCACACAT
TGTTTTGTTCTGAAGTTCTGCCACTAAGTGATTCTAAGTAAGCTTTCCTGTCTATTTGCA
TCAAATGTGAAGACTGTGATCACAACAGTAGCCAAATTTGATTTTGTTGCAAATAAAAAA
GAATTCTAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCGCGCCTCTTCGGATCGCACAGGTTGCAGCGAGTATATTAAGGACGATATAGCGACA
GAGCTACCTTGTCACCATTTCTTTCACAAACCTTGTGTCTCAATTTGGCTACAGAAGTCA
GGGACATGCCCTGTGTGCCGCCGTCATTTTCCACCTGCTGTGATTGAAACACCTGCAGCT
GCTTCCTCTGAGCCTGATCATGATGCCCCACCTTCAAATGACAGTACTGCAGAAGCCCCC
TAAACCCTAACACTTGAATGAGATCAGTCTATCAGAGTAAATCTGCCAATTCCTTCTAAA
TCTGATGTGCAAATAATTATATATAAATATATTAAAAATGCTATATATAGTCTATGCCAT
AGTTTAGAAAGAATATTAACCTTTCTAAACTAAATTTAGGTTTGCAGAAAGTACTAAACA
TTTTCAAGCTGAATGTTGAGCAGTGCATCCATTTTCTTTAGTTTAATATGTTATTAATTG
TAAAGTCAAGCTTATCAACTAACTTTCTCCAGAAGAAATAATCCTCTATGTGGCACACAT
TGTTTTGTTCTGAAGTTCTGCCACTAAGTGATTCTAAGTAAGCTTTCCTGTCTATTTGCA
TCAAATGTGAAGACTGTGATCACAACAGTAGCCAAATTTGATTTTGTTGCAAATAAAAAA
GAATTCTAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872510|ref|XP_588856.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872510|ref|XP_588856.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               352-467, - strand, RNAz p=0.560655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               352-467, - strand, RNAz p=0.560655

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               116-672, gnl|bosTau2|chr7 (68353628-68353069)
               

               
               116-672, gnl|Hg17|chr5 (108700958-108700398)
               

               
               116-672, gnl|Mm7|chr17 (62494113-62493583)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               116-672, gnl|bosTau2|chr7 (68353628-68353069)
               

               
               116-672, gnl|Hg17|chr5 (108700958-108700398)
               

               
               116-672, gnl|Mm7|chr17 (62494113-62493583)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mgp (0.230681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)

	116-672, gnl\|bosTau2\|chr7 (68353628-68353069)
	116-672, gnl\|Hg17\|chr5 (108700958-108700398)
	116-672, gnl\|Mm7\|chr17 (62494113-62493583)