Ss1.1-rmgp039_l19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAATTCTTATTACTTTTTATAAAAACAAAGTCAAGAGAGTTGTTTCTGTCTATATGTT TTAAAGTATTTTCACAGCTGAAAAGAGAAGAAATTAAAAATGCTGTTAATGATGACCCCT TTACATGAATACTTATGTATGTTTAGTTTTGTCTCTATTTAGATCTGTTAAATATATGTT GTTGTTTCTTGAAAGTGAAACTTTGAGAGACTATTTCTAATATTTAGATGACAAAAGCAT TTTGATAGTTGCTTCTATTCAAAGACATAGAAGAAGGCAATACCATAATAATTTTTTTAA CTGAGTTGTATCATCAACAATTTAATTTTATTACATCATGTTCTAATTTAAACATGTATT ACTCACTTGAGGACACTTAAATTCATAATTTTTGACATAAAATGTTTTATAGCTTTCTCA TTTCCTTAAGTTCTTAGTAACTCAGCTTTGAAAAATACCTACTAACCATAACCTTCCATA TTCTGGACTAGATCTTGTTTAGTTCAAAGCAGTGAAGGCAGATTTGGTATTTTGAAGAGG AGATAATAGCTATTATATTTTACACTTGCTTGACGTGACAACTCTAAAGACATTTTTAAA CTGATAAGAGTGCATATGGCTATTTTGATATCTATTAGAACCTGTGTTTGCTACTTTAGA AGCTTTTGTGGCAGAATTGTAACCTAATTTTCATATCTTGTATTTCTGAATCACCACAAG AAATAAATGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAATTCTTATTACTTTTTATAAAAACAAAGTCAAGAGAGTTGTTTCTGTCTATATGTT TTAAAGTATTTTCACAGCTGAAAAGAGAAGAAATTAAAAATGCTGTTAATGATGACCCCT TTACATGAATACTTATGTATGTTTAGTTTTGTCTCTATTTAGATCTGTTAAATATATGTT GTTGTTTCTTGAAAGTGAAACTTTGAGAGACTATTTCTAATATTTAGATGACAAAAGCAT TTTGATAGTTGCTTCTATTCAAAGACATAGAAGAAGGCAATACCATAATAATTTTTTTAA CTGAGTTGTATCATCAACAATTTAATTTTATTACATCATGTTCTAATTTAAACATGTATT ACTCACTTGAGGACACTTAAATTCATAATTTTTGACATAAAATGTTTTATAGCTTTCTCA TTTCCTTAAGTTCTTAGTAACTCAGCTTTGAAAAATACCTACTAACCATAACCTTCCATA TTCTGGACTAGATCTTGTTTAGTTCAAAGCAGTGAAGGCAGATTTGGTATTTTGAAGAGG AGATAATAGCTATTATATTTTACACTTGCTTGACGTGACAACTCTAAAGACATTTTTAAA CTGATAAGAGTGCATATGGCTATTTTGATATCTATTAGAACCTGTGTTTGCTACTTTAGA AGCTTTTGTGGCAGAATTGTAACCTAATTTTCATATCTTGTATTTCTGAATCACCACAAG AAATAAATGGGG |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 74-265, gnl|bosTau2|chr24 (44833365-44833171) | |
| 74-265, gnl|canFam2|chr1 (16735573-16735428) | |
| 74-265, gnl|dasNov1|scaffold_29192 (39485-39353) | |
| 74-265, gnl|galGal2|chr2 (67591729-67591568) | |
| 74-265, gnl|hg17|chr18 (59146432-59146566) | |
| 74-265, gnl|loxAfr1|scaffold_11430 (70232-70103) | |
| 74-265, gnl|mm7|chr1 (106621477-106621601) | |
| 74-265, gnl|monDom2|scaffold_4 (67296633-67296773) | |
| 74-265, gnl|oryCun1|scaffold_183500 (49917-49782) | |
| 74-265, gnl|panTro1|chr17 (55978315-55978446) | |
| 74-265, gnl|rheMac2|chr18 (56708527-56708660) | |
| 74-265, gnl|rn3|chr13 (12913027-12913147) | |
| 269-732, gnl|bosTau2|chr24 (44833149-44832685) | |
| 269-732, gnl|canFam2|chr1 (16736071-16735768) | |
| 269-732, gnl|dasNov1|scaffold_29192 (39991-39679) | |
| 269-732, gnl|echTel1|scaffold_170338 (3636-3949) | |
| 269-732, gnl|galGal2|chr2 (67592189-67591907) | |
| 269-732, gnl|hg17|chr18 (59145942-59146251) | |
| 269-732, gnl|Hg17|chr18 (59146422-59145962) | |
| 269-732, gnl|loxAfr1|scaffold_72095 (4128-3815) | |
| 269-732, gnl|mm7|chr1 (106621017-106621311) | |
| 269-732, gnl|Mm7|chr1 (106621467-106621037) | |
| 269-732, gnl|monDom2|scaffold_4 (67296111-67296425) | |
| 269-732, gnl|oryCun1|scaffold_183500 (50412-50100) | |
| 269-732, gnl|panTro1|chr17 (55977824-55978133) | |
| 269-732, gnl|rheMac2|chr18 (56708032-56708346) | |
| 269-732, gnl|rn3|chr13 (12912543-12912864) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 74-265, gnl|bosTau2|chr24 (44833365-44833171) | |
| 74-265, gnl|canFam2|chr1 (16735573-16735428) | |
| 74-265, gnl|dasNov1|scaffold_29192 (39485-39353) | |
| 74-265, gnl|galGal2|chr2 (67591729-67591568) | |
| 74-265, gnl|hg17|chr18 (59146432-59146566) | |
| 74-265, gnl|loxAfr1|scaffold_11430 (70232-70103) | |
| 74-265, gnl|mm7|chr1 (106621477-106621601) | |
| 74-265, gnl|monDom2|scaffold_4 (67296633-67296773) | |
| 74-265, gnl|oryCun1|scaffold_183500 (49917-49782) | |
| 74-265, gnl|panTro1|chr17 (55978315-55978446) | |
| 74-265, gnl|rheMac2|chr18 (56708527-56708660) | |
| 74-265, gnl|rn3|chr13 (12913027-12913147) | |
| 269-732, gnl|bosTau2|chr24 (44833149-44832685) | |
| 269-732, gnl|canFam2|chr1 (16736071-16735768) | |
| 269-732, gnl|dasNov1|scaffold_29192 (39991-39679) | |
| 269-732, gnl|echTel1|scaffold_170338 (3636-3949) | |
| 269-732, gnl|galGal2|chr2 (67592189-67591907) | |
| 269-732, gnl|hg17|chr18 (59145942-59146251) | |
| 269-732, gnl|Hg17|chr18 (59146422-59145962) | |
| 269-732, gnl|loxAfr1|scaffold_72095 (4128-3815) | |
| 269-732, gnl|mm7|chr1 (106621017-106621311) | |
| 269-732, gnl|Mm7|chr1 (106621467-106621037) | |
| 269-732, gnl|monDom2|scaffold_4 (67296111-67296425) | |
| 269-732, gnl|oryCun1|scaffold_183500 (50412-50100) | |
| 269-732, gnl|panTro1|chr17 (55977824-55978133) | |
| 269-732, gnl|rheMac2|chr18 (56708032-56708346) | |
| 269-732, gnl|rn3|chr13 (12912543-12912864) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fco (0.314416) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.314416) | |
| mgp (0.230681) | |
| aor (0.195274) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| med (0.116252) | |
| cty (0.10408) |