Non-Coding RNA Search

Ss1.1-rmgp039_n7.5

Sequence:


               
               TCTTTCCACAGCATGAGACTAACTCTTGTCAGTGAAAGCAAGAAAGACTTTCTTAGTTAA
GTGATTAACTACCATTTGTTCGAAATGTGGTGACTAAGCAAATAGCACTTAAATTACTGG
AATAGAGGTGAGGTCTTGAACTTTTGTACAATGTTCATTACCTTTGAGTAAATTGAAATG
TGAAGCCTTTTACTAGGTGAATAGTTTATTAGGTAATGGAGGCTTCATGTTTATCCACTG
AACTGGCACAGTGTTTTCTGTGATAAGTCTCTTCAACTCTATCAGATAGCTCGGTACACA
TCTGGTCACTTGGAGACTTTTTTTTCACATTTGTAAATAACTCAGGTAAACTCGACACTT
GGGGAGTATATAGTTATATGAAAGGACTTACAAAACAATCACTTTGGAAACCTGAATTGC
TGAGGTGCCCCTACATTCCTGACTGAGGCCCAGGGTGGGTGGGAAATCCAGAGCACCAAG
AAAGTTGCTATACCGATGATGTCACAGCGGTATTCACCTCTACATAGGATATTTTTATAT
TATTATTGGAATGGAATTTTAGACTATATAAATTTCCTTTGTGTGTATATTGGGGAAGAT
AGAAAAGAATCTGCTATTTCTCTGAATACAGTTTTGACCCAAGGCTGGACCTTGAAAAGG
CCAAAACATTAACAGTAGTACTTCTGTTCACTGAAGAGTTATGTTACATGAAAATAAAAT
GGGGTTTTTTGTAAGCTGTTTTATTGTATTCTGTGTTGAAATAAATAAACATGGTAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTCCACAGCATGAGACTAACTCTTGTCAGTGAAAGCAAGAAAGACTTTCTTAGTTAA
GTGATTAACTACCATTTGTTCGAAATGTGGTGACTAAGCAAATAGCACTTAAATTACTGG
AATAGAGGTGAGGTCTTGAACTTTTGTACAATGTTCATTACCTTTGAGTAAATTGAAATG
TGAAGCCTTTTACTAGGTGAATAGTTTATTAGGTAATGGAGGCTTCATGTTTATCCACTG
AACTGGCACAGTGTTTTCTGTGATAAGTCTCTTCAACTCTATCAGATAGCTCGGTACACA
TCTGGTCACTTGGAGACTTTTTTTTCACATTTGTAAATAACTCAGGTAAACTCGACACTT
GGGGAGTATATAGTTATATGAAAGGACTTACAAAACAATCACTTTGGAAACCTGAATTGC
TGAGGTGCCCCTACATTCCTGACTGAGGCCCAGGGTGGGTGGGAAATCCAGAGCACCAAG
AAAGTTGCTATACCGATGATGTCACAGCGGTATTCACCTCTACATAGGATATTTTTATAT
TATTATTGGAATGGAATTTTAGACTATATAAATTTCCTTTGTGTGTATATTGGGGAAGAT
AGAAAAGAATCTGCTATTTCTCTGAATACAGTTTTGACCCAAGGCTGGACCTTGAAAAGG
CCAAAACATTAACAGTAGTACTTCTGTTCACTGAAGAGTTATGTTACATGAAAATAAAAT
GGGGTTTTTTGTAAGCTGTTTTATTGTATTCTGTGTTGAAATAAATAAACATGGTAATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-732, + strand, RNAz p=0.978374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-732, + strand, RNAz p=0.978374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr2 (26168734-26167950)
               

               
               1-780, gnl|Hg17|chr2 (160782484-160781699)
               

               
               1-780, gnl|Mm7|chr2 (60529597-60528850)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr2 (26168734-26167950)
               

               
               1-780, gnl|Hg17|chr2 (160782484-160781699)
               

               
               1-780, gnl|Mm7|chr2 (60529597-60528850)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               isp (0.601504)
               

               
               cmu (0.372787)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               liv (0.146284)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               cmu (0.372787)
               

               
               mga (0.32041)
               

               
               mgp (0.230681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               liv (0.146284)

	1-780, gnl\|bosTau2\|chr2 (26168734-26167950)
	1-780, gnl\|Hg17\|chr2 (160782484-160781699)
	1-780, gnl\|Mm7\|chr2 (60529597-60528850)

	isp (0.601504)
	cmu (0.372787)
	mga (0.32041)
	mgp (0.230681)
	mgm (0.180343)
	sto (0.179824)
	liv (0.146284)