Non-Coding RNA Search

Ss1.1-rmgp21_l11.5.5

Sequence:


               
               TTATATTGAAGTGGCTCAGAGATGTTTTAGATGGGCTGGGTTTACACTGCAAAACCATCA
AAGCAAGAAAGGCCTTGGAGGAAGGTGACCACTGTGGGCGGCCTTACTGCCACGGTTCTT
TATTCAAAAACTGTTTGTGAGCCTGCAATTAACTTGCAAGGCTCCTTGTTTCTGTTGTTT
TATATGGAAGAACACCTTGGAATTTCCTATGTCTAAGCAAGGGGTGTGATTTACAAGAAG
TTCAGTCATTTCAACGGTATATCATTCTTAGCGTTCAATACAATGTTTATCATAAAATAT
GCACCTGAGTTTATATTTTCTGCCAGGCCGTAGGGCAGTGTGTCTTGCTATGCAAACACT
CTATTTTATGTGTGAATTTTTTTAACTGTAATTTTATGTGTGAATTTTTTTTAACTAAAC
TCTATCATCATTTTCTATGTTGACATCTGTTGTTTTTCGTGTTTTTTGGTTTTAATCTGT
TTCCAACTCTCTGAGTCTGTGAACCATCCCTCTGACTGGATGCTGGCCTAAAATCCTATT
AGTGTTTAAACAGACCTCAGAAACACCCTGAACCTCTAGGCGAGTGCAGAGATGGAGCTC
TTTGATATATCCTGGGCCCTTGATGTCTTCAACAAACAAGGTCGTAATTCCTTTAAACGC
AACGTTTTCGGTGGAGGCTTTCTTCTCTGTTTTGTTAAAGAGAGTCAACCCTCCGAGCTT
TTCCAAAGGAAGGAAACTCCTCCCCCAGACTTTAGCACTGGAAGGGAGGTTAGAGATGGT
GGAGTCTGGCATGCCTTCTGCCTTTCAAGATGAGGTGGCGGGTCCAGAATATTCAGGGGA
CATGTGTCAGCCACCTCGTACTCAGCAGTAGACCTGAGCATAAACTTGGGACTTTCTAAG
GCCTTGACTTTGTGCCCTCTGCCCCAGCACCTTTTGTTCTGGCTGGACACACTCGACACC
TGACCTGATTCTTCTCAGGACCTTCGCTGAGGAAGGCTCAATCGTGCCCAGTGTTAGGTG
TCTGGCTGTTAACTTTTCCCAACATTCTAAGTCCCTGATTCTTCCTGGAGAAGTTAAGGA
GCCACTTAATGCTTTTACAGGCCTCTCACTCTGCTGTCAGTGTGGCACACTTGAGTACAG
CCTGCTTGCCATAAAGTAAGCAGCATGTTTTGACAAATTCATTTTTCCCTGGGTGTTTAG
ATTTTAATTACAAAGAGGGCCCCGAGACATAATGGCTGAGCATCTGCTTTCTAGAAACTG
AGGTTCTCATGGTAACCAAGCAGGTATTTCCTCTCCCCTTAGACTAAGAGGTACATGTAA
TCCAACCCTCCCATCTCCCTGTCCTCTGGTACCTGCTGTGAGATCCGGGGAGCTTCTACC
CAGTGGAAGATCCCTCTCTGCTAATCCTCACAAGCAAAGGGGGGTTGTTCCAGGAGGCAG
CAAGGAGCAAGGGGCCACGATATTCATGACTTTGTCTGCTAGACATTTTTCAAAGTATCC
TTGAACTCAGCAAACAAAGCTTTCTGAGAGATCTCTCGAAACTCAGGCCCTGCTCCATTT
GGCCAAAAACAGATGGCTGCTTCAGAACTCTGAACTTGTTGAGAGTCCATCTGCTACAAC
ATTACTTCTGGAGTTTGAACATGGCTTTTTCTGTCTCTGAGTAGAGAAATGTTTGTCTAA
TTAACGATACAAAAGTCTGTTAAACAGAAGGCTCCAAGCGGTGCTCTTACACTTGAGAAC
TCTTGGCGCCATCTTTACTCTACCAAGTGCCAATCACCCTGGTGAAAGGGGGTGTATATT
AAAGTCCATATCCTAGGCTTAGACGCATTAATGTAGTTTTTTTTTTAATGAAAAATACTA
TAGGGGGTTGAACATTGTAACTAAAAGTATACGGTTAGACCAATTACATGCAAAGGTGTT
TATTTAATACTGTGTGAGCTGAGTCCTTCTGTATAAATTATTTGCACCCTTTTCTTGCAT
GAGGAACTGACTTTTTTATAGCTGTTTGTACCAGACGGTGGCATATTTTTGTAAAAATTT
TTTGACACTGAATTGCAATAAATGTTTTTCCAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATATTGAAGTGGCTCAGAGATGTTTTAGATGGGCTGGGTTTACACTGCAAAACCATCA
AAGCAAGAAAGGCCTTGGAGGAAGGTGACCACTGTGGGCGGCCTTACTGCCACGGTTCTT
TATTCAAAAACTGTTTGTGAGCCTGCAATTAACTTGCAAGGCTCCTTGTTTCTGTTGTTT
TATATGGAAGAACACCTTGGAATTTCCTATGTCTAAGCAAGGGGTGTGATTTACAAGAAG
TTCAGTCATTTCAACGGTATATCATTCTTAGCGTTCAATACAATGTTTATCATAAAATAT
GCACCTGAGTTTATATTTTCTGCCAGGCCGTAGGGCAGTGTGTCTTGCTATGCAAACACT
CTATTTTATGTGTGAATTTTTTTAACTGTAATTTTATGTGTGAATTTTTTTTAACTAAAC
TCTATCATCATTTTCTATGTTGACATCTGTTGTTTTTCGTGTTTTTTGGTTTTAATCTGT
TTCCAACTCTCTGAGTCTGTGAACCATCCCTCTGACTGGATGCTGGCCTAAAATCCTATT
AGTGTTTAAACAGACCTCAGAAACACCCTGAACCTCTAGGCGAGTGCAGAGATGGAGCTC
TTTGATATATCCTGGGCCCTTGATGTCTTCAACAAACAAGGTCGTAATTCCTTTAAACGC
AACGTTTTCGGTGGAGGCTTTCTTCTCTGTTTTGTTAAAGAGAGTCAACCCTCCGAGCTT
TTCCAAAGGAAGGAAACTCCTCCCCCAGACTTTAGCACTGGAAGGGAGGTTAGAGATGGT
GGAGTCTGGCATGCCTTCTGCCTTTCAAGATGAGGTGGCGGGTCCAGAATATTCAGGGGA
CATGTGTCAGCCACCTCGTACTCAGCAGTAGACCTGAGCATAAACTTGGGACTTTCTAAG
GCCTTGACTTTGTGCCCTCTGCCCCAGCACCTTTTGTTCTGGCTGGACACACTCGACACC
TGACCTGATTCTTCTCAGGACCTTCGCTGAGGAAGGCTCAATCGTGCCCAGTGTTAGGTG
TCTGGCTGTTAACTTTTCCCAACATTCTAAGTCCCTGATTCTTCCTGGAGAAGTTAAGGA
GCCACTTAATGCTTTTACAGGCCTCTCACTCTGCTGTCAGTGTGGCACACTTGAGTACAG
CCTGCTTGCCATAAAGTAAGCAGCATGTTTTGACAAATTCATTTTTCCCTGGGTGTTTAG
ATTTTAATTACAAAGAGGGCCCCGAGACATAATGGCTGAGCATCTGCTTTCTAGAAACTG
AGGTTCTCATGGTAACCAAGCAGGTATTTCCTCTCCCCTTAGACTAAGAGGTACATGTAA
TCCAACCCTCCCATCTCCCTGTCCTCTGGTACCTGCTGTGAGATCCGGGGAGCTTCTACC
CAGTGGAAGATCCCTCTCTGCTAATCCTCACAAGCAAAGGGGGGTTGTTCCAGGAGGCAG
CAAGGAGCAAGGGGCCACGATATTCATGACTTTGTCTGCTAGACATTTTTCAAAGTATCC
TTGAACTCAGCAAACAAAGCTTTCTGAGAGATCTCTCGAAACTCAGGCCCTGCTCCATTT
GGCCAAAAACAGATGGCTGCTTCAGAACTCTGAACTTGTTGAGAGTCCATCTGCTACAAC
ATTACTTCTGGAGTTTGAACATGGCTTTTTCTGTCTCTGAGTAGAGAAATGTTTGTCTAA
TTAACGATACAAAAGTCTGTTAAACAGAAGGCTCCAAGCGGTGCTCTTACACTTGAGAAC
TCTTGGCGCCATCTTTACTCTACCAAGTGCCAATCACCCTGGTGAAAGGGGGTGTATATT
AAAGTCCATATCCTAGGCTTAGACGCATTAATGTAGTTTTTTTTTTAATGAAAAATACTA
TAGGGGGTTGAACATTGTAACTAAAAGTATACGGTTAGACCAATTACATGCAAAGGTGTT
TATTTAATACTGTGTGAGCTGAGTCCTTCTGTATAAATTATTTGCACCCTTTTCTTGCAT
GAGGAACTGACTTTTTTATAGCTGTTTGTACCAGACGGTGGCATATTTTTGTAAAAATTT
TTTGACACTGAATTGCAATAAATGTTTTTCCAACAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1448-1561, - strand, RNAz p=0.955983
               

               
               1639-1796, - strand, RNAz p=0.861474

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1448-1561, - strand, RNAz p=0.955983
               

               
               1639-1796, - strand, RNAz p=0.861474

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2076, gnl|bosTau2|chr14 (7685409-7687488)
               

               
               1-2076, gnl|Hg17|chr8 (124581394-124579312)
               

               
               1-2076, gnl|Mm7|chr15 (58243460-58241219)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2076, gnl|bosTau2|chr14 (7685409-7687488)
               

               
               1-2076, gnl|Hg17|chr8 (124581394-124579312)
               

               
               1-2076, gnl|Mm7|chr15 (58243460-58241219)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               bla (0.621736)
               

               
               hea (0.613497)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ova (0.387397)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               hea (0.613497)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               ova (0.387397)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               che (0.272628)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	1448-1561, - strand, RNAz p=0.955983
	1639-1796, - strand, RNAz p=0.861474

	1-2076, gnl\|bosTau2\|chr14 (7685409-7687488)
	1-2076, gnl\|Hg17\|chr8 (124581394-124579312)
	1-2076, gnl\|Mm7\|chr15 (58243460-58241219)

	bla (0.621736)
	hea (0.613497)
	ssp (0.406559)
	ste (0.405625)
	ova (0.387397)
	rec (0.346141)
	vin (0.332557)
	sme (0.305437)
	isp (0.300752)
	ldo (0.291008)
	che (0.272628)
	mgp (0.230681)
	aor (0.195274)
	cmu (0.186393)
	gul (0.177588)
	fhi (0.169578)
	cli (0.152812)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	eru (0.120048)
	ecc (0.115035)