Non-Coding RNA Search

Ss1.1-rmgp21_l13.5

Sequence:


               
               GGCTTAATGTATTCAGATGTTTTCCTGCCTGTGTTTTAGATGTGTGTATCAGCAGCCGGC
AGCTAGGTCTGTGTACCCCTTCAGCCCTTCACCTACCTGGTGAGCTTTGCCGTTAGTCTG
CCTACTGCCTGCCTCATACATGAAATGAGGGGATTGGTCTGCTGATTGAGCTTCTAATTC
CTTTGCTTCTGTTCAACACTTCAGATCAAATCCCATTTTTGGGGGAGACATACTTGTTTG
GGCAGCCAGCCCTTGCATTTTTTTTTATATACTCTTGAATTTTGCATGCCTGCCTGGCTT
AGTATTTCTGAATTGATTTTTTTTCCTTCTTTTTATGGTATAACTTATGTTGATTTTCAC
TGAAATCATGGTTCTGTCACTACTTTTGTAAATTAATCTGAAACTTAACCTTCAAGGTAA
CTGGGATGATATGCTTGTAAAAGGATTTGTTTGCCTTTGCTTTTATATTAAGTGTACCTC
CTTAATCCCTTTCCAGTATGATTTATCTTGTTGTGAGAATAAGGTATAACCTTGTGGCTA
AAGACTTGCAAAGAGTAAAGATAGTGGGACCTTCTATTCTCAAAACAGTGAAATACTATC
TGCAGCCACAGATTCACTATCAGAGAGAATAAAGATTCTTGGTACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTAATGTATTCAGATGTTTTCCTGCCTGTGTTTTAGATGTGTGTATCAGCAGCCGGC
AGCTAGGTCTGTGTACCCCTTCAGCCCTTCACCTACCTGGTGAGCTTTGCCGTTAGTCTG
CCTACTGCCTGCCTCATACATGAAATGAGGGGATTGGTCTGCTGATTGAGCTTCTAATTC
CTTTGCTTCTGTTCAACACTTCAGATCAAATCCCATTTTTGGGGGAGACATACTTGTTTG
GGCAGCCAGCCCTTGCATTTTTTTTTATATACTCTTGAATTTTGCATGCCTGCCTGGCTT
AGTATTTCTGAATTGATTTTTTTTCCTTCTTTTTATGGTATAACTTATGTTGATTTTCAC
TGAAATCATGGTTCTGTCACTACTTTTGTAAATTAATCTGAAACTTAACCTTCAAGGTAA
CTGGGATGATATGCTTGTAAAAGGATTTGTTTGCCTTTGCTTTTATATTAAGTGTACCTC
CTTAATCCCTTTCCAGTATGATTTATCTTGTTGTGAGAATAAGGTATAACCTTGTGGCTA
AAGACTTGCAAAGAGTAAAGATAGTGGGACCTTCTATTCTCAAAACAGTGAAATACTATC
TGCAGCCACAGATTCACTATCAGAGAGAATAAAGATTCTTGGTACTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               219-338, - strand, RNAz p=0.873584
               

               
               533-648, - strand, RNAz p=0.747841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-338, - strand, RNAz p=0.873584
               

               
               533-648, - strand, RNAz p=0.747841

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-648, gnl|bosTau2|chr23 (20992352-20991738)
               

               
               1-648, gnl|Hg17|chrX (72226993-72227637)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr23 (20992352-20991738)
               

               
               1-648, gnl|Hg17|chrX (72226993-72227637)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.300752)
               

               
               mgp (0.230681)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	219-338, - strand, RNAz p=0.873584
	533-648, - strand, RNAz p=0.747841

	1-648, gnl\|bosTau2\|chr23 (20992352-20991738)
	1-648, gnl\|Hg17\|chrX (72226993-72227637)

	isp (0.300752)
	mgp (0.230681)
	fli (0.202881)
	fty (0.17584)
	fco (0.157208)
	lun (0.150489)
	ssp (0.13552)
	ova (0.129132)
	cty (0.10408)