Non-Coding RNA Search

Ss1.1-rmgp35_j24.5

Sequence:


               
               CTCCTGAACCCAGACAAGAATCCGGGGTTAATCAAGTGGGAAGACCGGTCTGAGGGCATC
TTCAGGTTCTTGAAATCAGAGGCCGTGGCACAGCTCTGGGGGAAAAAGAAAAACAACAGC
AGCATGACCTACGAAAAACTCAGCCGAGCCATGAGATATTACTACAAAAGAGAGATTCTG
GAACGTGTGGATGGAAGAAGACTGGTATATAAATTTGGGAAGAATGCACGTGGATGGAGG
GAAAATGAAAACTGAAGCTGGTAACACCTCGAACACAAACCCACCCCAAGTGACAACCAA
TCAAGAAGTCCTCAGACATAAATATTTCAAAGACTACTTTTCTCTGATATTTATGTACTT
TGAGGGGAAAATGAAACCACATCTACTTCTAATGGGAAGAAGGAACAGGACCGTTGATAA
AAAATTATTTTGTTACTTTTGAAGTATGTCCTATATGGGGAACAAACGTACACAGTTTTC
TGTGACATATGATGCTCTATGTGGTTTGTGATTTGTCGTTGCCTGCATTGTGAAGTTCTT
TTCCGCTGCAAGAAGAACCGTTTGTAGCCTTGTGCTTCTTGCTAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGAACCCAGACAAGAATCCGGGGTTAATCAAGTGGGAAGACCGGTCTGAGGGCATC
TTCAGGTTCTTGAAATCAGAGGCCGTGGCACAGCTCTGGGGGAAAAAGAAAAACAACAGC
AGCATGACCTACGAAAAACTCAGCCGAGCCATGAGATATTACTACAAAAGAGAGATTCTG
GAACGTGTGGATGGAAGAAGACTGGTATATAAATTTGGGAAGAATGCACGTGGATGGAGG
GAAAATGAAAACTGAAGCTGGTAACACCTCGAACACAAACCCACCCCAAGTGACAACCAA
TCAAGAAGTCCTCAGACATAAATATTTCAAAGACTACTTTTCTCTGATATTTATGTACTT
TGAGGGGAAAATGAAACCACATCTACTTCTAATGGGAAGAAGGAACAGGACCGTTGATAA
AAAATTATTTTGTTACTTTTGAAGTATGTCCTATATGGGGAACAAACGTACACAGTTTTC
TGTGACATATGATGCTCTATGTGGTTTGTGATTTGTCGTTGCCTGCATTGTGAAGTTCTT
TTCCGCTGCAAGAAGAACCGTTTGTAGCCTTGTGCTTCTTGCTAAGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|14198375|gb|AAH08249.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|14198375|gb|AAH08249.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               272-383, + strand, RNAz p=0.99761

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-383, + strand, RNAz p=0.99761

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AF124438, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF124438, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               154-588, gnl|bosTau2|chr15 (40414895-40414467)
               

               
               154-588, gnl|Hg17|chr11 (34636953-34637387)
               

               
               154-588, gnl|Mm7|chr2 (103117660-103117219)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-588, gnl|bosTau2|chr15 (40414895-40414467)
               

               
               154-588, gnl|Hg17|chr11 (34636953-34637387)
               

               
               154-588, gnl|Mm7|chr2 (103117660-103117219)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mgp (0.230681)
               

               
               cmu (0.186393)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               cmu (0.186393)

	154-588, gnl\|bosTau2\|chr15 (40414895-40414467)
	154-588, gnl\|Hg17\|chr11 (34636953-34637387)
	154-588, gnl\|Mm7\|chr2 (103117660-103117219)