Non-Coding RNA Search

Ss1.1-rnbm06b_c23.5

Sequence:


               
               CAAGTTCGTAGCCGTGGGCTTCCCCTTGTTGCTGATGTCCCTGGCATTTGCCCAGGAGTT
CTCCTCCGGGTCACCCATCAGCTGCTTCTCTCCTGGCAATTTCAGCATCCGGCAGGCTGC
CTACGTGGACAGTTCCTGTTGGGACTCACTGGTTCACCATGAACAGGATGAGTCTGGCCA
GTTCAAGACAAAATCCCTCTGGCCTCACAAGGCTCTCCCCTACTCCCTACTGGCCCTGGC
CGTGGGCATGTACCTGCCAGTTCTGCTCTGGCAGTATGCAGCCGTGCCAGCCCTCAGCTC
AGATCTGCTGTTCATCATCAGCGAACTGGACAAATCCTACAATCGTGCCATCCGCCTGGT
ACAGCACATGCTGAAGATCCAGCAGAAGAGTTCGGACCCCCATGTGTTCTGGGATGAGCT
GGAGAAGGCTCGGAAGGAACGATACTTTGAATTCCCCTTGCTAGAACGGTACCTGGCATG
TAAGCAGCGCTCACACTCACTAGTGGCTACCTACCTCCTGAGGAACTCCCTCTTGCTCCT
CTTCACCTCGGCCATCTACCTGTACCTTGGCCACTTCCACCTGGATGTCTTCTTCCAAGA
GGAATTCAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTTCGTAGCCGTGGGCTTCCCCTTGTTGCTGATGTCCCTGGCATTTGCCCAGGAGTT
CTCCTCCGGGTCACCCATCAGCTGCTTCTCTCCTGGCAATTTCAGCATCCGGCAGGCTGC
CTACGTGGACAGTTCCTGTTGGGACTCACTGGTTCACCATGAACAGGATGAGTCTGGCCA
GTTCAAGACAAAATCCCTCTGGCCTCACAAGGCTCTCCCCTACTCCCTACTGGCCCTGGC
CGTGGGCATGTACCTGCCAGTTCTGCTCTGGCAGTATGCAGCCGTGCCAGCCCTCAGCTC
AGATCTGCTGTTCATCATCAGCGAACTGGACAAATCCTACAATCGTGCCATCCGCCTGGT
ACAGCACATGCTGAAGATCCAGCAGAAGAGTTCGGACCCCCATGTGTTCTGGGATGAGCT
GGAGAAGGCTCGGAAGGAACGATACTTTGAATTCCCCTTGCTAGAACGGTACCTGGCATG
TAAGCAGCGCTCACACTCACTAGTGGCTACCTACCTCCTGAGGAACTCCCTCTTGCTCCT
CTTCACCTCGGCCATCTACCTGTACCTTGGCCACTTCCACCTGGATGTCTTCTTCCAAGA
GGAATTCAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40786493|ref|NP_955430.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40786493|ref|NP_955430.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               283-402, - strand, RNAz p=0.650426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-402, - strand, RNAz p=0.650426

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               210-427, gnl|bosTau2|chr29 (21016954-21016737)
               

               
               210-427, gnl|canFam2|chr5 (12791869-12791701)
               

               
               210-427, gnl|danRer3|chr10 (31391238-31391393)
               

               
               210-427, gnl|dasNov1|scaffold_60961 (209-366)
               

               
               210-427, gnl|echTel1|scaffold_296199 (4837-4669)
               

               
               210-427, gnl|fr1|chrUn (107222613-107222467)
               

               
               210-427, gnl|galGal2|chr24 (334195-334049)
               

               
               210-427, gnl|hg17|chr11 (123992353-123992520)
               

               
               210-427, gnl|Hg17|chr11 (123992378-123992595)
               

               
               210-427, gnl|loxAfr1|scaffold_32538 (35556-35388)
               

               
               210-427, gnl|mm7|chr9 (37592881-37592714)
               

               
               210-427, gnl|Mm7|chr9 (37592854-37592637)
               

               
               210-427, gnl|monDom2|scaffold_15 (10295471-10295651)
               

               
               210-427, gnl|oryCun1|scaffold_203513 (42577-42751)
               

               
               210-427, gnl|panTro1|chr9 (126073716-126073883)
               

               
               210-427, gnl|rheMac2|chr14 (122767766-122767933)
               

               
               210-427, gnl|rn3|chr8 (38915024-38914857)
               

               
               210-427, gnl|tetNig1|chr7 (744732-744899)
               

               
               210-427, gnl|xenTro1|scaffold_1314 (114698-114552)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               210-427, gnl|bosTau2|chr29 (21016954-21016737)
               

               
               210-427, gnl|canFam2|chr5 (12791869-12791701)
               

               
               210-427, gnl|danRer3|chr10 (31391238-31391393)
               

               
               210-427, gnl|dasNov1|scaffold_60961 (209-366)
               

               
               210-427, gnl|echTel1|scaffold_296199 (4837-4669)
               

               
               210-427, gnl|fr1|chrUn (107222613-107222467)
               

               
               210-427, gnl|galGal2|chr24 (334195-334049)
               

               
               210-427, gnl|hg17|chr11 (123992353-123992520)
               

               
               210-427, gnl|Hg17|chr11 (123992378-123992595)
               

               
               210-427, gnl|loxAfr1|scaffold_32538 (35556-35388)
               

               
               210-427, gnl|mm7|chr9 (37592881-37592714)
               

               
               210-427, gnl|Mm7|chr9 (37592854-37592637)
               

               
               210-427, gnl|monDom2|scaffold_15 (10295471-10295651)
               

               
               210-427, gnl|oryCun1|scaffold_203513 (42577-42751)
               

               
               210-427, gnl|panTro1|chr9 (126073716-126073883)
               

               
               210-427, gnl|rheMac2|chr14 (122767766-122767933)
               

               
               210-427, gnl|rn3|chr8 (38915024-38914857)
               

               
               210-427, gnl|tetNig1|chr7 (744732-744899)
               

               
               210-427, gnl|xenTro1|scaffold_1314 (114698-114552)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nbm (0.198649)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)

	210-427, gnl\|bosTau2\|chr29 (21016954-21016737)
	210-427, gnl\|canFam2\|chr5 (12791869-12791701)
	210-427, gnl\|danRer3\|chr10 (31391238-31391393)
	210-427, gnl\|dasNov1\|scaffold_60961 (209-366)
	210-427, gnl\|echTel1\|scaffold_296199 (4837-4669)
	210-427, gnl\|fr1\|chrUn (107222613-107222467)
	210-427, gnl\|galGal2\|chr24 (334195-334049)
	210-427, gnl\|hg17\|chr11 (123992353-123992520)
	210-427, gnl\|Hg17\|chr11 (123992378-123992595)
	210-427, gnl\|loxAfr1\|scaffold_32538 (35556-35388)
	210-427, gnl\|mm7\|chr9 (37592881-37592714)
	210-427, gnl\|Mm7\|chr9 (37592854-37592637)
	210-427, gnl\|monDom2\|scaffold_15 (10295471-10295651)
	210-427, gnl\|oryCun1\|scaffold_203513 (42577-42751)
	210-427, gnl\|panTro1\|chr9 (126073716-126073883)
	210-427, gnl\|rheMac2\|chr14 (122767766-122767933)
	210-427, gnl\|rn3\|chr8 (38915024-38914857)
	210-427, gnl\|tetNig1\|chr7 (744732-744899)
	210-427, gnl\|xenTro1\|scaffold_1314 (114698-114552)