Non-Coding RNA Search

Ss1.1-rnbm07b_o15.5

Sequence:


               
               GCGGCCGCTGTTGTCACCATTAGTTGTGCACTTACTGTGTGTTATACCAGGCAGTGTGTT
GGGTACCATTATTGTCTTTAATTAAATGGAAAACACCATCACACTTTTAAGATGTATCCT
TATTTCAGAGATGTTAGAATGTATGTGTGTGTGTGGGGGGGTATATCTCAGAATATAGGA
CATTTAGCTCATTTTAACCTTCACAACAACCCAATAAAATGTGTGCTAAATCTCCACTTA
ACAAATGTTGACACTGAGGTTCAGAGAAGCTAAGAAACTTGTCCTAAGTCACACAGTTGG
TAAGTGTGAGAACTGGAATTCAAATTCATATCTCCAATACTGAAGCACAGAACACTCCTC
CCCAGCGCATCTGTCCAGCCCTGGTGTCCGTGGTAACTTCAGCCTGGGTGCAGCTACCTT
TGTGGACCTACTAGGGAACCCTGGGGCTCCTCTGAGTGAAAGAGCTAGTGCTCACTCTTC
CTGCCCACTCTTATGTCCAGCAGATTTAAGATCTCCAAGGTCATTGTGGTGGGGGACCTG
TCGGTGGGGAAGACTTGTCTCATTAATAGGTAAGAGGGGGGTGTTAGCTGAGCTGGGTTG
TGCTGGGCAGGGTGGGCCCAGGTCTAGCCACATGGGCTGGGCTCAGGACCAGAGCATCTG
GTGCCCCCTCAGGTTCTGCAAAGACACGTTTGATAAGAACTATAAGGC------------
TGGACTTTGAGATGGAACGATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGTTGTCACCATTAGTTGTGCACTTACTGTGTGTTATACCAGGCAGTGTGTT
GGGTACCATTATTGTCTTTAATTAAATGGAAAACACCATCACACTTTTAAGATGTATCCT
TATTTCAGAGATGTTAGAATGTATGTGTGTGTGTGGGGGGGTATATCTCAGAATATAGGA
CATTTAGCTCATTTTAACCTTCACAACAACCCAATAAAATGTGTGCTAAATCTCCACTTA
ACAAATGTTGACACTGAGGTTCAGAGAAGCTAAGAAACTTGTCCTAAGTCACACAGTTGG
TAAGTGTGAGAACTGGAATTCAAATTCATATCTCCAATACTGAAGCACAGAACACTCCTC
CCCAGCGCATCTGTCCAGCCCTGGTGTCCGTGGTAACTTCAGCCTGGGTGCAGCTACCTT
TGTGGACCTACTAGGGAACCCTGGGGCTCCTCTGAGTGAAAGAGCTAGTGCTCACTCTTC
CTGCCCACTCTTATGTCCAGCAGATTTAAGATCTCCAAGGTCATTGTGGTGGGGGACCTG
TCGGTGGGGAAGACTTGTCTCATTAATAGGTAAGAGGGGGGTGTTAGCTGAGCTGGGTTG
TGCTGGGCAGGGTGGGCCCAGGTCTAGCCACATGGGCTGGGCTCAGGACCAGAGCATCTG
GTGCCCCCTCAGGTTCTGCAAAGACACGTTTGATAAGAACTATAAGGC------------
TGGACTTTGAGATGGAACGATTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               389-708, + strand, RNAz p=0.998867

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-708, + strand, RNAz p=0.998867

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               500-708, BP146349 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP146349.1|), blast E-value=0.00000000009, identity=100% 
               

               
               500-708, BP457463 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP457463.1|), blast E-value=0.00000000009, identity=100% 
               

               
               500-708, BW966041 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966041.1|), blast E-value=0.00000000009, identity=100% 
               

               
               410-571, 170964 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE484377.1|), 
blast E-value=0, identity=91.98% 
               

               
               399-571, cs104e10.y1 Human Retinal pigment epithelium/choroid cDNA 
(gb|CA389945.1|), blast E-value=0, identity=89.02% 
               

               
               399-708, yl83b04.r1 Soares infant brain 1NIB Homo sapiens cDNA clone 
(gb|H06755.1|), blast E-value=0, identity=83.87%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               500-708, BP146349 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP146349.1|), blast E-value=0.00000000009, identity=100% 
               

               
               500-708, BP457463 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP457463.1|), blast E-value=0.00000000009, identity=100% 
               

               
               500-708, BW966041 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BW966041.1|), blast E-value=0.00000000009, identity=100% 
               

               
               410-571, 170964 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb|BE484377.1|), 
blast E-value=0, identity=91.98% 
               

               
               399-571, cs104e10.y1 Human Retinal pigment epithelium/choroid cDNA 
(gb|CA389945.1|), blast E-value=0, identity=89.02% 
               

               
               399-708, yl83b04.r1 Soares infant brain 1NIB Homo sapiens cDNA clone 
(gb|H06755.1|), blast E-value=0, identity=83.87%

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               169-732, gnl|bosTau2|chr19 (13683307-13682751)
               

               
               169-732, gnl|Hg17|chr17 (24067552-24066976)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-732, gnl|bosTau2|chr19 (13683307-13682751)
               

               
               169-732, gnl|Hg17|chr17 (24067552-24066976)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nbm (0.0993246)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.0993246)

	500-708, BP146349 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP146349.1\|), blast E-value=0.00000000009, identity=100%
	500-708, BP457463 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP457463.1\|), blast E-value=0.00000000009, identity=100%
	500-708, BW966041 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BW966041.1\|), blast E-value=0.00000000009, identity=100%
	410-571, 170964 BARC 5BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE484377.1\|), blast E-value=0, identity=91.98%
	399-571, cs104e10.y1 Human Retinal pigment epithelium/choroid cDNA (gb\|CA389945.1\|), blast E-value=0, identity=89.02%
	399-708, yl83b04.r1 Soares infant brain 1NIB Homo sapiens cDNA clone (gb\|H06755.1\|), blast E-value=0, identity=83.87%

	169-732, gnl\|bosTau2\|chr19 (13683307-13682751)
	169-732, gnl\|Hg17\|chr17 (24067552-24066976)