Non-Coding RNA Search

Ss1.1-rnbm08b_b7.5

Sequence:


               
               GAGAGGCAGGACTTCCTGTTCTGTTTTGGAGCGACTGCCGGAAATAACTGCGGGCGAATC
GGCGTGTCCGGAGGCCGGTAGAGTTTGGGGTGGCAGTGCTAATTGCAGCTTTCGGCGCGA
AAAATGCCGGGTCTGGCGGCCGCAATCCCTGCCCCGCCTGAATCGCAGGAGAAGAAGCCG
CTGAAGCCCTGCTGCGCCTGCCCGGAGACCAAGAAAGCGCGCGATGCGTGCATCATTGAA
AAAGGAGAAGAGCACTGTGGACACCTAATTGAGGCCCACAAGGAGTGCATGAGAGCCCTG
GGATTTAAGATATGAAATGGTGGTCTGCGTTGTGAATGAATAATTCCTGAGAAGTGAAGA
AGATTCAGTGACTTTGGGAGTTCTTTGATGAACTTTGCTAAATAAAAAGTATTTATAATT
TGTTAGAAAATATATATCCCTGGTTAAAAATCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGGCAGGACTTCCTGTTCTGTTTTGGAGCGACTGCCGGAAATAACTGCGGGCGAATC
GGCGTGTCCGGAGGCCGGTAGAGTTTGGGGTGGCAGTGCTAATTGCAGCTTTCGGCGCGA
AAAATGCCGGGTCTGGCGGCCGCAATCCCTGCCCCGCCTGAATCGCAGGAGAAGAAGCCG
CTGAAGCCCTGCTGCGCCTGCCCGGAGACCAAGAAAGCGCGCGATGCGTGCATCATTGAA
AAAGGAGAAGAGCACTGTGGACACCTAATTGAGGCCCACAAGGAGTGCATGAGAGCCCTG
GGATTTAAGATATGAAATGGTGGTCTGCGTTGTGAATGAATAATTCCTGAGAAGTGAAGA
AGATTCAGTGACTTTGGGAGTTCTTTGATGAACTTTGCTAAATAAAAAGTATTTATAATT
TGTTAGAAAATATATATCCCTGGTTAAAAATCAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2829723|sp|P81045|COXS_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2829723|sp|P81045|COXS_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               209-323, - strand, RNAz p=0.659888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-323, - strand, RNAz p=0.659888

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               24-323, gnl|bosTau2|chr15 (13469483-13469204)
               

               
               24-323, gnl|Mm7|chr16 (38053751-38056035)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-323, gnl|bosTau2|chr15 (13469483-13469204)
               

               
               24-323, gnl|Mm7|chr16 (38053751-38056035)

Expressed library(ies): 52 entry(ies)

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Expressed library(ies): 52 entry(ies)

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               cki (5.12227)
               

               
               sto (4.67542)
               

               
               che (4.08942)
               

               
               cje (3.13946)
               

               
               cmu (2.98229)
               

               
               cst (2.38062)
               

               
               cut (2.03908)
               

               
               cbe (1.19617)
               

               
               sme (0.91631)
               

               
               csk (0.844476)
               

               
               nlu (0.766724)
               

               
               cag (0.755972)
               

               
               col (0.585023)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               csp (0.483559)
               

               
               bfe (0.449573)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               cly (0.361925)
               

               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (5.12227)
               

               
               sto (4.67542)
               

               
               che (4.08942)
               

               
               cje (3.13946)
               

               
               cmu (2.98229)
               

               
               cst (2.38062)
               

               
               cut (2.03908)
               

               
               cbe (1.19617)
               

               
               sme (0.91631)
               

               
               csk (0.844476)
               

               
               nlu (0.766724)
               

               
               cag (0.755972)
               

               
               col (0.585023)
               

               
               ill (0.526778)
               

               
               duo (0.518403)
               

               
               nbm (0.496623)
               

               
               csp (0.483559)
               

               
               bfe (0.449573)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               cly (0.361925)
               

               
               ton (0.351)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	24-323, gnl\|bosTau2\|chr15 (13469483-13469204)
	24-323, gnl\|Mm7\|chr16 (38053751-38056035)

	cki (5.12227)
	sto (4.67542)
	che (4.08942)
	cje (3.13946)
	cmu (2.98229)
	cst (2.38062)
	cut (2.03908)
	cbe (1.19617)
	sme (0.91631)
	csk (0.844476)
	nlu (0.766724)
	cag (0.755972)
	col (0.585023)
	ill (0.526778)
	duo (0.518403)
	nbm (0.496623)
	csp (0.483559)
	bfe (0.449573)
	pty (0.428143)
	nca (0.410621)
	cly (0.361925)
	ton (0.351)
	nco (0.323468)
	eli (0.303628)
	jej (0.296765)
	spl (0.286369)
	lnt (0.284616)
	med (0.232504)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	eje (0.197668)
	nep (0.183925)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	cli (0.152812)
	ski (0.146735)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	ova (0.129132)
	tra (0.123092)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)