Non-Coding RNA Search

Ss1.1-rnbm09b_a21.5

Sequence:


               
               TGGAAGTATATTTGCATGTAACCCAAATTAGCTTCTCCTGCATAGAGCGTAAGAAGCGTG
TGTCTTTGGTGACACTCATGTTCGACTGTAGCTTATTTTCAAGAAAAGGGTTTAAAAAAG
AAAAAAAAGTGTACAGAATCAACATATAAGCCTTGTTGTAAAACTGGACCATGTCGGAAC
TGCTTCTGATTAACCTTTACCATTTAAGGCCATCTACCTGAAAACAGTGAGATTTATACT
GTATCGATGTCTATTTTTTTGTTTTTGCTATGAATATAATTACAGTATTTTAATATTTAG
TTATTTAATTTGTTCTACTAGTTGGATACAGAACACACAAATCCAGGGAGACTAAAGCTG
GTGGGGGCTAAGAGAAGAGTTTAGTTTACAGAAAAAAGGCTTTGGTGGTGGGATTTTTTA
AAACTGTGTGTTATGTACATATATATGTATATATATAAAAAACAAATGAAACAATTAATC
TAGATTTTAACATTTTCAGATATTTAGTGATAATATTACGAACAATTCTAAAAGCCCTGT
GATTTGAAAAATGTAGACGCATCTATGGCCCAAGAAAGGAAGGACAGGCCTTCACACCTC
ACGGAGCATCGCAGGAAGGGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGTATATTTGCATGTAACCCAAATTAGCTTCTCCTGCATAGAGCGTAAGAAGCGTG
TGTCTTTGGTGACACTCATGTTCGACTGTAGCTTATTTTCAAGAAAAGGGTTTAAAAAAG
AAAAAAAAGTGTACAGAATCAACATATAAGCCTTGTTGTAAAACTGGACCATGTCGGAAC
TGCTTCTGATTAACCTTTACCATTTAAGGCCATCTACCTGAAAACAGTGAGATTTATACT
GTATCGATGTCTATTTTTTTGTTTTTGCTATGAATATAATTACAGTATTTTAATATTTAG
TTATTTAATTTGTTCTACTAGTTGGATACAGAACACACAAATCCAGGGAGACTAAAGCTG
GTGGGGGCTAAGAGAAGAGTTTAGTTTACAGAAAAAAGGCTTTGGTGGTGGGATTTTTTA
AAACTGTGTGTTATGTACATATATATGTATATATATAAAAAACAAATGAAACAATTAATC
TAGATTTTAACATTTTCAGATATTTAGTGATAATATTACGAACAATTCTAAAAGCCCTGT
GATTTGAAAAATGTAGACGCATCTATGGCCCAAGAAAGGAAGGACAGGCCTTCACACCTC
ACGGAGCATCGCAGGAAGGGCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.569611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.569611

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014991, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014991, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr6 (57992919-57993541)
               

               
               1-624, gnl|Hg17|chr4 (85950275-85949628)
               

               
               1-624, gnl|Mm7|chr5 (101023578-101022974)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr6 (57992919-57993541)
               

               
               1-624, gnl|Hg17|chr4 (85950275-85949628)
               

               
               1-624, gnl|Mm7|chr5 (101023578-101022974)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bla (0.124347)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)
               

               
               nbm (0.0993246)

	1-624, gnl\|bosTau2\|chr6 (57992919-57993541)
	1-624, gnl\|Hg17\|chr4 (85950275-85949628)
	1-624, gnl\|Mm7\|chr5 (101023578-101022974)