Ss1.1-rnbm09b_f16.5
|
GTTTTAAAACTCTTAGATGAGACCGATGCCTCACCTAGTTAGAAAACCGTGCTTTTAAAG
TGAGTAATAATGATACATTTGCTAAAGTATCAGATCTTTAGGCTTTGGTTTTCAGCTATC
GAAAGGTCAGACTTTAAGACTGGGAGAGACAGATTGGTGCAATTAAAAGTGTAATTAGGA
GACACGTTGACTGTAGGAGAATAGTCAGGTAGCTGAAGGATTAGAACCATAAGTGCTCAA
GTACTGACAAAGAATATGTATGTTAAAAAATCTGTATTTTATCAGGAAAGAGTCACCTTG
GGCTTATCACAAAAACCCCTCACATTCACATGGTAACGTAGCATGCAAATACTTTGTTAT
GTCATGATAACTCCATTGGGCTTTAAAACAAAGAGATACAGAGCAAGCAGTTTCATCTTC
ATTTTGAGACTCAGAGTCTGGCCCCAAGCTGCATGGAATTAGAGTCAGGGCTCAAGCTGT
ATTTGCTGATCACTGTTAGCTGCCTGGTCCAGGAGACCAGGAAGTCAGGAGACGAAGTTG
TTTAGTCATACCTCATCTTTTAAGGTGACAGGGAAATACATTGAAAATAAATTTTAAACT
AAGATTTTAAAAGTTTAAAGAACAGCTTTATTACTTAAATGGGGAATTTATCTGGAAAAT
ACATTGAATTGAAACACCTCATTCTCAAGAGGATTGTGTAAGCTTAATAATTCTATATAA
ATTTTTAAAATGGAAGAGATGCTGGCGGGCCATCAGTCCAGGACCCTCACTTAAAGAGAT
GAGGATCCTGAGACTCGGGGTGTAGGATTTGCCCAGGGCTAACTAGCTCATGTGACCAAA
TGCTGGAAAAAATCTTTTACCTTCTATTCCTTAATTATGGATTTTATGAAATACAGGACA
CACTAGTAGATGATTTATATTAGTTCCATGTGTTACCCTTTTTTAGCTTAAAATTAGACT
TTTTGTAATGATGGAATATCTTAGAATCCTTTTCAGAGTATTCACTTTCTTTCCTAATAG
AGACATTTGTACAACTGACGCATTTTGTTTTTACTTAGAAACAACCCCCACAAGGTTAAA
GTTTCTCTCTTGAAGAGCTAAGCTGGTGTTTTCGAAGGAAAAGTGAAATCTTTTCCTGTA
GCTTCTTTTTTAGGTATAATGGCTTTTTTACTTTGTTATTGTGGTAAGGGACAGAAAATT
AAAATATTTGGGGGATGCTTTCTCCTAGTTGGTTTTAAATTATTGTGCTACCTGAAATGT
TTTTAGATTATTACACTGTTTTTCCCACCAGCATTTAATATGATGCCATGTAAATTACTG
AAGGATAAGAAGTGGGTACCAAGTGATTTTCATAACTTGGACATTTAATGAATGTGCCAA
CATTTTTTAAGGAAGAATCGCAAAAAATATTCTGCCCTATACTTAAAATACTGGCTGGCT
TAAGAGTCTTCATACTTAATAGTGATCACTTGCTTGCACTGTGGCACTGTGAAGTTTTTA
CATGGAGCTGTTGAGGTGGCAGTCTACCCTATTTTATAAAATGTTTTGTGTATGGCAACA
AAGTGGCAACATGGATCAACTCTTATTCTGAAAATA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GTTTTAAAACTCTTAGATGAGACCGATGCCTCACCTAGTTAGAAAACCGTGCTTTTAAAG
TGAGTAATAATGATACATTTGCTAAAGTATCAGATCTTTAGGCTTTGGTTTTCAGCTATC
GAAAGGTCAGACTTTAAGACTGGGAGAGACAGATTGGTGCAATTAAAAGTGTAATTAGGA
GACACGTTGACTGTAGGAGAATAGTCAGGTAGCTGAAGGATTAGAACCATAAGTGCTCAA
GTACTGACAAAGAATATGTATGTTAAAAAATCTGTATTTTATCAGGAAAGAGTCACCTTG
GGCTTATCACAAAAACCCCTCACATTCACATGGTAACGTAGCATGCAAATACTTTGTTAT
GTCATGATAACTCCATTGGGCTTTAAAACAAAGAGATACAGAGCAAGCAGTTTCATCTTC
ATTTTGAGACTCAGAGTCTGGCCCCAAGCTGCATGGAATTAGAGTCAGGGCTCAAGCTGT
ATTTGCTGATCACTGTTAGCTGCCTGGTCCAGGAGACCAGGAAGTCAGGAGACGAAGTTG
TTTAGTCATACCTCATCTTTTAAGGTGACAGGGAAATACATTGAAAATAAATTTTAAACT
AAGATTTTAAAAGTTTAAAGAACAGCTTTATTACTTAAATGGGGAATTTATCTGGAAAAT
ACATTGAATTGAAACACCTCATTCTCAAGAGGATTGTGTAAGCTTAATAATTCTATATAA
ATTTTTAAAATGGAAGAGATGCTGGCGGGCCATCAGTCCAGGACCCTCACTTAAAGAGAT
GAGGATCCTGAGACTCGGGGTGTAGGATTTGCCCAGGGCTAACTAGCTCATGTGACCAAA
TGCTGGAAAAAATCTTTTACCTTCTATTCCTTAATTATGGATTTTATGAAATACAGGACA
CACTAGTAGATGATTTATATTAGTTCCATGTGTTACCCTTTTTTAGCTTAAAATTAGACT
TTTTGTAATGATGGAATATCTTAGAATCCTTTTCAGAGTATTCACTTTCTTTCCTAATAG
AGACATTTGTACAACTGACGCATTTTGTTTTTACTTAGAAACAACCCCCACAAGGTTAAA
GTTTCTCTCTTGAAGAGCTAAGCTGGTGTTTTCGAAGGAAAAGTGAAATCTTTTCCTGTA
GCTTCTTTTTTAGGTATAATGGCTTTTTTACTTTGTTATTGTGGTAAGGGACAGAAAATT
AAAATATTTGGGGGATGCTTTCTCCTAGTTGGTTTTAAATTATTGTGCTACCTGAAATGT
TTTTAGATTATTACACTGTTTTTCCCACCAGCATTTAATATGATGCCATGTAAATTACTG
AAGGATAAGAAGTGGGTACCAAGTGATTTTCATAACTTGGACATTTAATGAATGTGCCAA
CATTTTTTAAGGAAGAATCGCAAAAAATATTCTGCCCTATACTTAAAATACTGGCTGGCT
TAAGAGTCTTCATACTTAATAGTGATCACTTGCTTGCACTGTGGCACTGTGAAGTTTTTA
CATGGAGCTGTTGAGGTGGCAGTCTACCCTATTTTATAAAATGTTTTGTGTATGGCAACA
AAGTGGCAACATGGATCAACTCTTATTCTGAAAATA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
aor (0.781097) |
|
vin (0.332557) |
|
lun (0.300978) |
|
isp (0.300752) |
|
kid (0.259471) |
|
col (0.195008) |
|
sag (0.182715) |
|
tbr (0.154178) |
|
lin (0.145603) |
|
csk (0.140746) |
|
ste (0.135208) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
aor (0.781097) |
|
vin (0.332557) |
|
lun (0.300978) |
|
isp (0.300752) |
|
kid (0.259471) |
|
col (0.195008) |
|
sag (0.182715) |
|
tbr (0.154178) |
|
lin (0.145603) |
|
csk (0.140746) |
|
ste (0.135208) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cbl (0.114797) |
|
jca (0.11396) |
|
spc (0.113366) |
|
nbm (0.0993246) |