Non-Coding RNA Search

Ss1.1-rnbm10b_p11.5

Sequence:


               
               GGAAAACTCGATAACTGTTGTAGCTTTTTCTTTTAAATTAATTTAGTCTTTATAGGATTA
CTTTATATTGGGGTTTAAGTTGTGATTTTTATACTAAAATTGTCTTAAGTCAGTTGATAA
CTTTAGTTGATATGTACTTTTGCACTGAAACTTTTTTTTGACTATATTCTTTTAGTGATA
ACTGGTTTAGGTTGATAGCCTATAATGGGTATATGTTTACAGAGTGCATATGGCAACTTG
ATATTGTGAGATCAAACCTCAGCTATTTTTGTTTAAAGCCTTCAACTTTATAAGTTTTTA
CAGTGAGACATTTTCTTTTATAAATTTTTTTTTTTTGTGCTTTGTTCTTAAATGAAAATG
CCACCAATTGGGATTATTATAGTTTAGCGATGAAGATTTTTCTAATGATATTTGGCATAG
CATAGCTAAGACAGTATTATATTTTAAAATATTAGTGAAATCATTCCTAGTGTCATTATT
TTTCTGCAGGTGAACATTAAAACTTTTCTATTAGAAAATCTTAAAATTCCTGACTTTTAA
GAATACTGTGGAAGTTGTTGAAATACATTTTTGATGATAATAAAATGAAAATCCTTTTAA
AGGACCATGTACATATTGAAGATGGATTAATACATAAATTATTTTTTTATATTTTCAAAA
CTGTTTGTCCTAAATGCACACTTTAAAATAAATATATAGAAAGTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAACTCGATAACTGTTGTAGCTTTTTCTTTTAAATTAATTTAGTCTTTATAGGATTA
CTTTATATTGGGGTTTAAGTTGTGATTTTTATACTAAAATTGTCTTAAGTCAGTTGATAA
CTTTAGTTGATATGTACTTTTGCACTGAAACTTTTTTTTGACTATATTCTTTTAGTGATA
ACTGGTTTAGGTTGATAGCCTATAATGGGTATATGTTTACAGAGTGCATATGGCAACTTG
ATATTGTGAGATCAAACCTCAGCTATTTTTGTTTAAAGCCTTCAACTTTATAAGTTTTTA
CAGTGAGACATTTTCTTTTATAAATTTTTTTTTTTTGTGCTTTGTTCTTAAATGAAAATG
CCACCAATTGGGATTATTATAGTTTAGCGATGAAGATTTTTCTAATGATATTTGGCATAG
CATAGCTAAGACAGTATTATATTTTAAAATATTAGTGAAATCATTCCTAGTGTCATTATT
TTTCTGCAGGTGAACATTAAAACTTTTCTATTAGAAAATCTTAAAATTCCTGACTTTTAA
GAATACTGTGGAAGTTGTTGAAATACATTTTTGATGATAATAAAATGAAAATCCTTTTAA
AGGACCATGTACATATTGAAGATGGATTAATACATAAATTATTTTTTTATATTTTCAAAA
CTGTTTGTCCTAAATGCACACTTTAAAATAAATATATAGAAAGTCAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-705, gnl|bosTau2|chr9 (43264178-43264890)
               

               
               1-705, gnl|canFam2|chr1 (30813566-30814113)
               

               
               1-705, gnl|echTel1|scaffold_224404 (2067-1438)
               

               
               1-705, gnl|galGal2|chr3 (54684213-54683641)
               

               
               1-705, gnl|hg17|chr4 (2056954-2057515)
               

               
               1-705, gnl|Hg17|chr6 (135399380-135398696)
               

               
               1-705, gnl|loxAfr1|scaffold_6975 (54799-54263)
               

               
               1-705, gnl|mm7|chr10 (71914065-71913554)
               

               
               1-705, gnl|Mm7|chr10 (21036583-21037254)
               

               
               1-705, gnl|monDom2|scaffold_0 (75689463-75688901)
               

               
               1-705, gnl|oryCun1|scaffold_212611 (65189-65704)
               

               
               1-705, gnl|panTro1|chr3 (2160173-2160734)
               

               
               1-705, gnl|rheMac2|chr1 (1861814-1861255)
               

               
               1-705, gnl|rn3|chr1 (16674648-16674144)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-705, gnl|bosTau2|chr9 (43264178-43264890)
               

               
               1-705, gnl|canFam2|chr1 (30813566-30814113)
               

               
               1-705, gnl|echTel1|scaffold_224404 (2067-1438)
               

               
               1-705, gnl|galGal2|chr3 (54684213-54683641)
               

               
               1-705, gnl|hg17|chr4 (2056954-2057515)
               

               
               1-705, gnl|Hg17|chr6 (135399380-135398696)
               

               
               1-705, gnl|loxAfr1|scaffold_6975 (54799-54263)
               

               
               1-705, gnl|mm7|chr10 (71914065-71913554)
               

               
               1-705, gnl|Mm7|chr10 (21036583-21037254)
               

               
               1-705, gnl|monDom2|scaffold_0 (75689463-75688901)
               

               
               1-705, gnl|oryCun1|scaffold_212611 (65189-65704)
               

               
               1-705, gnl|panTro1|chr3 (2160173-2160734)
               

               
               1-705, gnl|rheMac2|chr1 (1861814-1861255)
               

               
               1-705, gnl|rn3|chr1 (16674648-16674144)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ret (0.128733)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.128733)
               

               
               nbm (0.0993246)

	1-705, gnl\|bosTau2\|chr9 (43264178-43264890)
	1-705, gnl\|canFam2\|chr1 (30813566-30814113)
	1-705, gnl\|echTel1\|scaffold_224404 (2067-1438)
	1-705, gnl\|galGal2\|chr3 (54684213-54683641)
	1-705, gnl\|hg17\|chr4 (2056954-2057515)
	1-705, gnl\|Hg17\|chr6 (135399380-135398696)
	1-705, gnl\|loxAfr1\|scaffold_6975 (54799-54263)
	1-705, gnl\|mm7\|chr10 (71914065-71913554)
	1-705, gnl\|Mm7\|chr10 (21036583-21037254)
	1-705, gnl\|monDom2\|scaffold_0 (75689463-75688901)
	1-705, gnl\|oryCun1\|scaffold_212611 (65189-65704)
	1-705, gnl\|panTro1\|chr3 (2160173-2160734)
	1-705, gnl\|rheMac2\|chr1 (1861814-1861255)
	1-705, gnl\|rn3\|chr1 (16674648-16674144)