Non-Coding RNA Search

Ss1.1-rnbm11b_l22.5

Sequence:


               
               AGGATATCAAGAGCTTGAAGCAAGTAATTAATCAAACCTCAGGGCAGAGAACCGAGCGTA
AAGCCACTGGGAGCCAGTACTCGAGCGCAGCTCCGCCCCTCTTTTGGCCGCTATGGAACC
GGACGGGACCTACGAGCCAGGCTTCGTGGGTATTCGATTCTGCCAGGATGGGCGGGCAGC
GCGCCGCTATGGAACCGGACGGGACCTACGAGCCAGGCTTCGTGGGTATTCGATTCTGCC
AGGAATGCAACAACATGCTTTACCCCAAGGAAGACAAGGAGAACCGCATTCTGCTCTACG
CGTGCCGGAATTGTGATTACCAGCAGGAGGCTGACAACAGCTGCATCTACGTCAACAAAA
TCACACACGAAGTGGACGAACTAACCCAGATCATCGCTGACGTGTCCCAGGACCCCACGT
TGCCGCGGACTGAAGACCACCCATGCCAAAAGTGCGGCCACAAGGAGGCGGTGTTCTTCC
AGTCACACAGTGCCCGGGCCGAGGACGCCATGCGCTTGTACTACGTGTGCACGGCCCCAC
ACTGCGGCCACCGCTGGACCGAGTGAACCACCCTCCCCTCGTGTAATAAATGCTGTGTTC
TGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATATCAAGAGCTTGAAGCAAGTAATTAATCAAACCTCAGGGCAGAGAACCGAGCGTA
AAGCCACTGGGAGCCAGTACTCGAGCGCAGCTCCGCCCCTCTTTTGGCCGCTATGGAACC
GGACGGGACCTACGAGCCAGGCTTCGTGGGTATTCGATTCTGCCAGGATGGGCGGGCAGC
GCGCCGCTATGGAACCGGACGGGACCTACGAGCCAGGCTTCGTGGGTATTCGATTCTGCC
AGGAATGCAACAACATGCTTTACCCCAAGGAAGACAAGGAGAACCGCATTCTGCTCTACG
CGTGCCGGAATTGTGATTACCAGCAGGAGGCTGACAACAGCTGCATCTACGTCAACAAAA
TCACACACGAAGTGGACGAACTAACCCAGATCATCGCTGACGTGTCCCAGGACCCCACGT
TGCCGCGGACTGAAGACCACCCATGCCAAAAGTGCGGCCACAAGGAGGCGGTGTTCTTCC
AGTCACACAGTGCCCGGGCCGAGGACGCCATGCGCTTGTACTACGTGTGCACGGCCCCAC
ACTGCGGCCACCGCTGGACCGAGTGAACCACCCTCCCCTCGTGTAATAAATGCTGTGTTC
TGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34855683|ref|XP_214895.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34855683|ref|XP_214895.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-247, gnl|bosTau2|chr18 (41892921-41892676)
               

               
               1-247, gnl|Hg17|chr19 (41297792-41297540)
               

               
               1-247, gnl|Mm7|chr7 (27173992-27174239)
               


               
               502-605, gnl|bosTau2|chr18 (41891607-41891505)
               

               
               502-605, gnl|Hg17|chr19 (41296561-41296455)
               

               
               502-605, gnl|Mm7|chr7 (27175118-27175223)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-247, gnl|bosTau2|chr18 (41892921-41892676)
               

               
               1-247, gnl|Hg17|chr19 (41297792-41297540)
               

               
               1-247, gnl|Mm7|chr7 (27173992-27174239)
               


               
               502-605, gnl|bosTau2|chr18 (41891607-41891505)
               

               
               502-605, gnl|Hg17|chr19 (41296561-41296455)
               

               
               502-605, gnl|Mm7|chr7 (27175118-27175223)

Expressed library(ies): 27 entry(ies)

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Expressed library(ies): 27 entry(ies)

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               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               elu (0.385356)
               

               
               cki (0.330469)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-247, gnl\|bosTau2\|chr18 (41892921-41892676)
	1-247, gnl\|Hg17\|chr19 (41297792-41297540)
	1-247, gnl\|Mm7\|chr7 (27173992-27174239)

	502-605, gnl\|bosTau2\|chr18 (41891607-41891505)
	502-605, gnl\|Hg17\|chr19 (41296561-41296455)
	502-605, gnl\|Mm7\|chr7 (27175118-27175223)

	hlv (0.417769)
	elu (0.385356)
	cki (0.330469)
	csk (0.281492)
	che (0.272628)
	eep (0.245128)
	med (0.232504)
	ece (0.229305)
	nbm (0.198649)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	nco (0.161734)
	tbr (0.154178)
	cag (0.151194)
	hyp (0.142837)
	cst (0.140036)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)