Ss1.1-rnbm14b_c22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGGACGACCACACCTTCAACGTGGACCAGAAGCTCCCGGCGGAGGAGAAGGCCCCCGT CACGTACCCGAGCACGCTGCCGGAGAGCTTCACTAAGTTCCTGCAGGAGCAGCGCATGGC CTGCGAGGTGGGGCTGTACTACGTGCTGCACATCACCAAGCAGAGGAACAAGAACGCGCT CCTGCGCCTGCTGCCGGGGCTCGTGGAGACCTTCGGTGACCTGGCATTCAGCGACATCTT CCTGCACCTGCTCACGGGGAACCTGGCGCTGCTGGCGGATGAGTTCGCTCTGGAGGATTT CTGCAGCAGCCTCTTCGACGGCTTCCTCCTCACCGCCTCCCCAAGGAAGGAGAACGTGCA GCGGCACGTGCTGCGGCTCCTCATCCACCTGCACCAGCGCGTGGCCCCGTCCAAGCTGGA GGCCCTGCAGAAGGCACTGGAGCCCACTGGCCAGAGTGGAGAGGCGGTGAAGGAGCTTTA TTCCCAGCTCGGTGAGAAGCTGGAGCAGCTGGACCACCGAAAGCCAAGTCCGGCCCAGGC TGCGGAGACCCCGGCCCTGGAGCTGCCCCTCCCGGCCGTGCCTGCCCCGGCTGTGCTCTG AGGCTCCGCCTGGGGCTGCTCGGCCAGAGGAGACCCCCTTACCTGCGAGAGCCAGGAGCC CGACTTTCCTGGATGGGCCTGGGGGTGGGCTGAGCAGGGCCCCCCTGCCCACCCCTTGGC CTCGCCTGAACTCAGACCTGGGAGGTGTGTGCCTCTCGTGGGAAGGGGTTTGCAAGCCCT CGCCAGCTCGGGATCTGTGCTCCCAGGCCCAGGACAGCTGCTGGCTCCCGCCTTGCGTTG TGGGTTTGTAGTGCTGCTGGGCAGGCAGGCAGTGTCTTGGGGAAAAAGTCACCTGTTTTC CGAGGCCCGAGGGGAATTAGGTGGCTGGTGGGTTGGCGCGACATCACCGGGTTTGCTCTC CGAGGGCGTCCTCCCATGTGGATGCTCCCCAGTAGCCTGCCTGGGGGTCAGGGCCTGGCC CTTCCTGCTGCCTTGGTTTACCCTCAGGTGACGTGCTCCCGGTTCAGCCAGGCGGGTGGC TCATGGTGACACTTTTACTCATGTAAATAAAAGGCGTTTTGGTAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGGACGACCACACCTTCAACGTGGACCAGAAGCTCCCGGCGGAGGAGAAGGCCCCCGT CACGTACCCGAGCACGCTGCCGGAGAGCTTCACTAAGTTCCTGCAGGAGCAGCGCATGGC CTGCGAGGTGGGGCTGTACTACGTGCTGCACATCACCAAGCAGAGGAACAAGAACGCGCT CCTGCGCCTGCTGCCGGGGCTCGTGGAGACCTTCGGTGACCTGGCATTCAGCGACATCTT CCTGCACCTGCTCACGGGGAACCTGGCGCTGCTGGCGGATGAGTTCGCTCTGGAGGATTT CTGCAGCAGCCTCTTCGACGGCTTCCTCCTCACCGCCTCCCCAAGGAAGGAGAACGTGCA GCGGCACGTGCTGCGGCTCCTCATCCACCTGCACCAGCGCGTGGCCCCGTCCAAGCTGGA GGCCCTGCAGAAGGCACTGGAGCCCACTGGCCAGAGTGGAGAGGCGGTGAAGGAGCTTTA TTCCCAGCTCGGTGAGAAGCTGGAGCAGCTGGACCACCGAAAGCCAAGTCCGGCCCAGGC TGCGGAGACCCCGGCCCTGGAGCTGCCCCTCCCGGCCGTGCCTGCCCCGGCTGTGCTCTG AGGCTCCGCCTGGGGCTGCTCGGCCAGAGGAGACCCCCTTACCTGCGAGAGCCAGGAGCC CGACTTTCCTGGATGGGCCTGGGGGTGGGCTGAGCAGGGCCCCCCTGCCCACCCCTTGGC CTCGCCTGAACTCAGACCTGGGAGGTGTGTGCCTCTCGTGGGAAGGGGTTTGCAAGCCCT CGCCAGCTCGGGATCTGTGCTCCCAGGCCCAGGACAGCTGCTGGCTCCCGCCTTGCGTTG TGGGTTTGTAGTGCTGCTGGGCAGGCAGGCAGTGTCTTGGGGAAAAAGTCACCTGTTTTC CGAGGCCCGAGGGGAATTAGGTGGCTGGTGGGTTGGCGCGACATCACCGGGTTTGCTCTC CGAGGGCGTCCTCCCATGTGGATGCTCCCCAGTAGCCTGCCTGGGGGTCAGGGCCTGGCC CTTCCTGCTGCCTTGGTTTACCCTCAGGTGACGTGCTCCCGGTTCAGCCAGGCGGGTGGC TCATGGTGACACTTTTACTCATGTAAATAAAAGGCGTTTTGGTAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr11 (85432027-85431912) | |
| 1-114, gnl|canFam2|chr9 (51742414-51742244) | |
| 1-114, gnl|danRer3|chr5 (24030313-24030480) | |
| 1-114, gnl|dasNov1|scaffold_251076 (641-816) | |
| 1-114, gnl|echTel1|scaffold_290975 (1252-1085) | |
| 1-114, gnl|fr1|chrUn (242586613-242586467) | |
| 1-114, gnl|galGal2|chr17 (8977043-8976880) | |
| 1-114, gnl|hg17|chr9 (137437206-137437381) | |
| 1-114, gnl|Hg17|chr9 (137437280-137437415) | |
| 1-114, gnl|loxAfr1|scaffold_62481 (16123-15957) | |
| 1-114, gnl|mm7|chr2 (25210836-25210656) | |
| 1-114, gnl|Mm7|chr2 (25210754-25210612) | |
| 1-114, gnl|monDom2|scaffold_1 (187201112-187201277) | |
| 1-114, gnl|rn3|chr3 (3369023-3368843) | |
| 1-114, gnl|tetNig1|chrUn_random (20247579-20247766) | |
| 1-114, gnl|xenTro1|scaffold_346 (54353-54191) | |
| 185-346, gnl|bosTau2|chr11 (85429690-85429530) | |
| 185-346, gnl|Hg17|chr9 (137442352-137442512) | |
| 185-346, gnl|Mm7|chr2 (25208521-25208355) | |
| 452-639, gnl|bosTau2|chr11 (85429167-85428980) | |
| 452-639, gnl|Hg17|chr9 (137443068-137443251) | |
| 452-639, gnl|Mm7|chr2 (25207780-25207594) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr11 (85432027-85431912) | |
| 1-114, gnl|canFam2|chr9 (51742414-51742244) | |
| 1-114, gnl|danRer3|chr5 (24030313-24030480) | |
| 1-114, gnl|dasNov1|scaffold_251076 (641-816) | |
| 1-114, gnl|echTel1|scaffold_290975 (1252-1085) | |
| 1-114, gnl|fr1|chrUn (242586613-242586467) | |
| 1-114, gnl|galGal2|chr17 (8977043-8976880) | |
| 1-114, gnl|hg17|chr9 (137437206-137437381) | |
| 1-114, gnl|Hg17|chr9 (137437280-137437415) | |
| 1-114, gnl|loxAfr1|scaffold_62481 (16123-15957) | |
| 1-114, gnl|mm7|chr2 (25210836-25210656) | |
| 1-114, gnl|Mm7|chr2 (25210754-25210612) | |
| 1-114, gnl|monDom2|scaffold_1 (187201112-187201277) | |
| 1-114, gnl|rn3|chr3 (3369023-3368843) | |
| 1-114, gnl|tetNig1|chrUn_random (20247579-20247766) | |
| 1-114, gnl|xenTro1|scaffold_346 (54353-54191) | |
| 185-346, gnl|bosTau2|chr11 (85429690-85429530) | |
| 185-346, gnl|Hg17|chr9 (137442352-137442512) | |
| 185-346, gnl|Mm7|chr2 (25208521-25208355) | |
| 452-639, gnl|bosTau2|chr11 (85429167-85428980) | |
| 452-639, gnl|Hg17|chr9 (137443068-137443251) | |
| 452-639, gnl|Mm7|chr2 (25207780-25207594) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| nms (0.427716) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cly (0.241284) | |
| med (0.232504) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cly (0.241284) | |
| med (0.232504) | |
| ton (0.1755) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nbm (0.0993246) | |
| eje (0.0988338) |