Ss1.1-rnbm14b_l15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTATCCGGAGTTTCTTGCAGCCTTTTCCCAGCCACAGGTGGCACGTGTCCCCCTGGA GGGTCAATGCTTACTATTCAATATCTGACCATGTGGTAGTCTTTCCAGCCGGACTCCTCC AACCCCCATTCTTCCACCCTGGCTACCCCAGAGCCGTGAACTACGGCGCTGCTGGCAGCA TCATGGCCCATGAGCTCTTGCACATCTTCTACCAGCTGTTACTCCCTGGGGGCTGCCCGG CCTGTGACTCCCATGCCCTACAGGAGGCGCTGCAGTGCCTGGAGCGCCACTATGCTGGCT TTCCACTACCCAGTGGAATCTCCTTCAATGGCTCCTACTCATTCCTGGAGGATGCCGCAG ACACAGGGGGGCTGGCCATTGCACTGCAGGCATACAACAAGAGGCTGTTACGGTACCGTG GGGAGACCACCCTACCCAACCAGGACCTGAGCCCCCAGCAGCTCTTCTTCCGAAGCTATG CCCAGGTCATGTGTAAGGACCCCAACTTCCAGGATCCTCAGGATACTCACAGCCCTGCTA TCCTCCGAACCCACGGGCCCGTGAGCAACAGCCCAGCCTTCGCCAGACACTTCCACTGCC CCCCTGGTGCTCCCATGAACCCCTCCATCCGCTGCCAACTCTGGTAAGCTGGCCAGTTGC CAAAGAGCCCTCAGTATGGACGTATCATTGTCTCCTTGCCCTGTCCATGAAATCAGGATG GACTTCTCTCCCGTTCTGCTCCCCAAATAAAACCTGGTCCTTGGCTTCAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTATCCGGAGTTTCTTGCAGCCTTTTCCCAGCCACAGGTGGCACGTGTCCCCCTGGA GGGTCAATGCTTACTATTCAATATCTGACCATGTGGTAGTCTTTCCAGCCGGACTCCTCC AACCCCCATTCTTCCACCCTGGCTACCCCAGAGCCGTGAACTACGGCGCTGCTGGCAGCA TCATGGCCCATGAGCTCTTGCACATCTTCTACCAGCTGTTACTCCCTGGGGGCTGCCCGG CCTGTGACTCCCATGCCCTACAGGAGGCGCTGCAGTGCCTGGAGCGCCACTATGCTGGCT TTCCACTACCCAGTGGAATCTCCTTCAATGGCTCCTACTCATTCCTGGAGGATGCCGCAG ACACAGGGGGGCTGGCCATTGCACTGCAGGCATACAACAAGAGGCTGTTACGGTACCGTG GGGAGACCACCCTACCCAACCAGGACCTGAGCCCCCAGCAGCTCTTCTTCCGAAGCTATG CCCAGGTCATGTGTAAGGACCCCAACTTCCAGGATCCTCAGGATACTCACAGCCCTGCTA TCCTCCGAACCCACGGGCCCGTGAGCAACAGCCCAGCCTTCGCCAGACACTTCCACTGCC CCCCTGGTGCTCCCATGAACCCCTCCATCCGCTGCCAACTCTGGTAAGCTGGCCAGTTGC CAAAGAGCCCTCAGTATGGACGTATCATTGTCTCCTTGCCCTGTCCATGAAATCAGGATG GACTTCTCTCCCGTTCTGCTCCCCAAATAAAACCTGGTCCTTGGCTTCAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 35-151, - strand, RNAz p=0.805106 | |
| 35-142, - strand, RNAz p=0.964982 | |
| 560-679, - strand, RNAz p=0.507563 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 35-151, - strand, RNAz p=0.805106 | |
| 35-142, - strand, RNAz p=0.964982 | |
| 560-679, - strand, RNAz p=0.507563 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 35-151, gnl|bosTau2|chr4 (60448034-60448150) | |
| 35-151, gnl|canFam2|chr16 (9622114-9621808) | |
| 35-151, gnl|dasNov1|scaffold_47792 (8334-8635) | |
| 35-151, gnl|echTel1|scaffold_303551 (7540-7321) | |
| 35-151, gnl|hg17|chr7 (142157406-142157716) | |
| 35-151, gnl|Hg17|chr7 (142157526-142157410) | |
| 35-151, gnl|mm7|chr6 (41619605-41619871) | |
| 35-151, gnl|Mm7|chr6 (41619725-41619609) | |
| 35-151, gnl|monDom2|scaffold_7 (1163093-1163418) | |
| 35-151, gnl|oryCun1|scaffold_188987 (98624-98318) | |
| 35-151, gnl|panTro1|chr6 (144949566-144949875) | |
| 35-151, gnl|rheMac2|chr3 (180579758-180580068) | |
| 35-151, gnl|rn3|chr4 (69670973-69671241) | |
| 220-390, gnl|bosTau2|chr4 (60448598-60448768) | |
| 220-390, gnl|canFam2|chr16 (9622715-9622503) | |
| 220-390, gnl|dasNov1|scaffold_205863 (233-16) | |
| 220-390, gnl|hg17|chr7 (142156768-142156990) | |
| 220-390, gnl|Hg17|chr7 (142156968-142156798) | |
| 220-390, gnl|mm7|chr6 (41619003-41619199) | |
| 220-390, gnl|Mm7|chr6 (41619184-41619014) | |
| 220-390, gnl|monDom2|scaffold_7 (1162085-1162275) | |
| 220-390, gnl|oryCun1|scaffold_188987 (99190-98974) | |
| 220-390, gnl|panTro1|chr6 (144948858-144949080) | |
| 220-390, gnl|rheMac2|chr3 (180579137-180579352) | |
| 220-390, gnl|rn3|chr4 (69670378-69670574) | |
| 481-768, gnl|bosTau2|chr4 (60449939-60450228) | |
| 481-768, gnl|canFam2|chr16 (9623995-9623608) | |
| 481-768, gnl|echTel1|scaffold_303551 (9266-8923) | |
| 481-768, gnl|hg17|chr7 (142155050-142155407) | |
| 481-768, gnl|Hg17|chr7 (142155342-142155052) | |
| 481-768, gnl|mm7|chr6 (41617398-41617743) | |
| 481-768, gnl|Mm7|chr6 (41617683-41617400) | |
| 481-768, gnl|monDom2|scaffold_7 (1158799-1159145) | |
| 481-768, gnl|oryCun1|scaffold_188987 (100486-100137) | |
| 481-768, gnl|rheMac2|chr3 (180577416-180577773) | |
| 481-768, gnl|rn3|chr4 (69668977-69669319) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-151, gnl|bosTau2|chr4 (60448034-60448150) | |
| 35-151, gnl|canFam2|chr16 (9622114-9621808) | |
| 35-151, gnl|dasNov1|scaffold_47792 (8334-8635) | |
| 35-151, gnl|echTel1|scaffold_303551 (7540-7321) | |
| 35-151, gnl|hg17|chr7 (142157406-142157716) | |
| 35-151, gnl|Hg17|chr7 (142157526-142157410) | |
| 35-151, gnl|mm7|chr6 (41619605-41619871) | |
| 35-151, gnl|Mm7|chr6 (41619725-41619609) | |
| 35-151, gnl|monDom2|scaffold_7 (1163093-1163418) | |
| 35-151, gnl|oryCun1|scaffold_188987 (98624-98318) | |
| 35-151, gnl|panTro1|chr6 (144949566-144949875) | |
| 35-151, gnl|rheMac2|chr3 (180579758-180580068) | |
| 35-151, gnl|rn3|chr4 (69670973-69671241) | |
| 220-390, gnl|bosTau2|chr4 (60448598-60448768) | |
| 220-390, gnl|canFam2|chr16 (9622715-9622503) | |
| 220-390, gnl|dasNov1|scaffold_205863 (233-16) | |
| 220-390, gnl|hg17|chr7 (142156768-142156990) | |
| 220-390, gnl|Hg17|chr7 (142156968-142156798) | |
| 220-390, gnl|mm7|chr6 (41619003-41619199) | |
| 220-390, gnl|Mm7|chr6 (41619184-41619014) | |
| 220-390, gnl|monDom2|scaffold_7 (1162085-1162275) | |
| 220-390, gnl|oryCun1|scaffold_188987 (99190-98974) | |
| 220-390, gnl|panTro1|chr6 (144948858-144949080) | |
| 220-390, gnl|rheMac2|chr3 (180579137-180579352) | |
| 220-390, gnl|rn3|chr4 (69670378-69670574) | |
| 481-768, gnl|bosTau2|chr4 (60449939-60450228) | |
| 481-768, gnl|canFam2|chr16 (9623995-9623608) | |
| 481-768, gnl|echTel1|scaffold_303551 (9266-8923) | |
| 481-768, gnl|hg17|chr7 (142155050-142155407) | |
| 481-768, gnl|Hg17|chr7 (142155342-142155052) | |
| 481-768, gnl|mm7|chr6 (41617398-41617743) | |
| 481-768, gnl|Mm7|chr6 (41617683-41617400) | |
| 481-768, gnl|monDom2|scaffold_7 (1158799-1159145) | |
| 481-768, gnl|oryCun1|scaffold_188987 (100486-100137) | |
| 481-768, gnl|rheMac2|chr3 (180577416-180577773) | |
| 481-768, gnl|rn3|chr4 (69668977-69669319) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.297974) | |
| ute (0.132784) |