Non-Coding RNA Search

Ss1.1-rnbm15b_c7.5

Sequence:


               
               GTCTACCCCGAGCAATGGGACTGTGTGATCAGCAAAGTCCTGACCTTCGACCTCACCAAG
TACCCAGATGCCAACCCCAACCCCAATGAGCAGTAGCAGTAGTTCTGCCCTCCTGCCCTG
TCTGGATCCCTAAGCTGCCCCTCTCCCAATCTCTGGATATTTGGCTCCCAACCTTCCCCT
ACCTCCTGTCCCTGTTTGGTATATATCATGGGATTTAGGCACTGCTATCAAGCACGAAGA
GGAACAGAGGTGATGTTAGTTCTGGAGCAAAAATTCCTGAGCTTCAGGGAGCATCCTGGC
CTCTGAAAGGAGGTGCTGAGCTGAGCTGAACTGAGCTGAACAGGGCCATCTCTCCATCCC
TCCTCCTCCCATCCCAGACCTTCCCCCATCACCCATAATCATGGGTCCTGTGGGATGCCT
TTCATTTTGCTTGTGTGTGGGTATGTATGTGTGTGTATATGTGTCTGCATGTGTGCATGT
GGGTGTGTTTGCAAAATAATAAAGATATTGGAGACCCATTTTAGAAGGAGCCTAGGCTGA
ATTTGATTCCAAGAGAGCTTAGTATGACAGCACCCCGGAGCTGGGCAAAGGTATTCCGGA
CCTCATAGGATTCAGGCAGTTATATGAAACCACCCTCATTCATTCATTCATGTTTTCATT
CATTTGTGTGTTTATCAAACATGTACTGAACATCCTCTATTTGTCAGTCTCTAAGCTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTACCCCGAGCAATGGGACTGTGTGATCAGCAAAGTCCTGACCTTCGACCTCACCAAG
TACCCAGATGCCAACCCCAACCCCAATGAGCAGTAGCAGTAGTTCTGCCCTCCTGCCCTG
TCTGGATCCCTAAGCTGCCCCTCTCCCAATCTCTGGATATTTGGCTCCCAACCTTCCCCT
ACCTCCTGTCCCTGTTTGGTATATATCATGGGATTTAGGCACTGCTATCAAGCACGAAGA
GGAACAGAGGTGATGTTAGTTCTGGAGCAAAAATTCCTGAGCTTCAGGGAGCATCCTGGC
CTCTGAAAGGAGGTGCTGAGCTGAGCTGAACTGAGCTGAACAGGGCCATCTCTCCATCCC
TCCTCCTCCCATCCCAGACCTTCCCCCATCACCCATAATCATGGGTCCTGTGGGATGCCT
TTCATTTTGCTTGTGTGTGGGTATGTATGTGTGTGTATATGTGTCTGCATGTGTGCATGT
GGGTGTGTTTGCAAAATAATAAAGATATTGGAGACCCATTTTAGAAGGAGCCTAGGCTGA
ATTTGATTCCAAGAGAGCTTAGTATGACAGCACCCCGGAGCTGGGCAAAGGTATTCCGGA
CCTCATAGGATTCAGGCAGTTATATGAAACCACCCTCATTCATTCATTCATGTTTTCATT
CATTTGTGTGTTTATCAAACATGTACTGAACATCCTCTATTTGTCAGTCTCTAAGCTAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               51-248, - strand, RNAz p=0.970885
               

               
               369-488, + strand, RNAz p=0.976142

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               51-248, - strand, RNAz p=0.970885
               

               
               369-488, + strand, RNAz p=0.976142

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               47-184, - strand, RNAmicro p=0.993147

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               47-184, - strand, RNAmicro p=0.993147

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006306, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006306, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-718, gnl|bosTau2|chrX (545009-544314)
               

               
               11-718, gnl|Hg17|chrX (53290130-53289442)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-718, gnl|bosTau2|chrX (545009-544314)
               

               
               11-718, gnl|Hg17|chrX (53290130-53289442)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               eye (0.170503)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eye (0.170503)
               

               
               nbm (0.0993246)

	51-248, - strand, RNAz p=0.970885
	369-488, + strand, RNAz p=0.976142

	11-718, gnl\|bosTau2\|chrX (545009-544314)
	11-718, gnl\|Hg17\|chrX (53290130-53289442)